| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0780 |
|---|
| Symbol | |
|---|
| ID | 6283298 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 857359 |
|---|
| End bp | 858705 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642620344 |
|---|
| Product | homogentisate 1,2-dioxygenase |
|---|
| Protein accession | YP_001894427 |
|---|
| Protein GI | 187922785 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3508] Homogentisate 1,2-dioxygenase |
|---|
| TIGRFAM ID | [TIGR01015] homogentisate 1,2-dioxygenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.90704 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.708148 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATACCC CAACCCGTAC GCCGCACAAC GGCCGCTCGC GGCTCGAAAT CGAGCCCGGC
TATCAGTCGG GCTTCGCGAA CGAATTCGCC ACCGAGGCCT TGCCGGGCGC GTTGCCACAA
GGCCGCAACT CGCCGCAGCG CGCGGCTTAT GGTCTGTACG CCGAACAACT GTCGGGCACG
GCGTTCACTG CGCCGCGCGG CCATAATCGC CGCTCGTGGC TGTACCGGAT TCGGCCGGCG
GCAGTGCATA TGCCGTTCAC GCCACTGCCC TCGGAGCGGC TCGTCGCCAA CTTCGCCGAG
GTGCCGCCGA CGCCGCCCAA CCAGTTGCGC TGGGACGCAT TGCCGATGCC GGCCGAGCCA
ACCGACTTCA TCGACGGCTG GGTGACGATG GCGGGCAACG GCGCGGCCGA GTCGATGACC
GGCTGCGCGA TTCACGTGTA CGCGGCGAAC CGCTCGATGC AGGACCGCTT CTTCTACACC
GCCGACGGCG AATTGCTGAT CGTGCCGCAG GAAGGACGCC TGCACATCGC CACCGAGTTC
GGCAAGCTCG ACGTCGGGCC CTTCGAAATC GCGGTGATTC CGCGCGGCGT GCGTTTCGCG
GTGAGTCTGC CGGACGGCGT GGCGCGCGGC TACATCTGCG AGAACTTCGG GGCGTTGCTG
CGTTTACCGG ATCTTGGTCC GATCGGCTCA AACGGCCTCG CCAATCCGCG TGATTTCCTC
ACGCCGCACG CGGCCTACGA AGACCGTGAA GGCGATTTCG AACTCGTCGC CAAGATGAAC
GGCAACCTGT GGCGCGCGGA CATCGGCCAT TCGCCGCTCG ACGTGGTCGC GTGGCACGGC
AATTACGCGC CCTACAAGTA CGATCTGCGC CGCTTCAACA CGATCGGCTC GATCAGCTTC
GACCATCCGG ATCCGTCGAT CTTTCTCGTG CTGCAATCGC AAACCGACAC GCCGGGTGTC
GATAGCATCG ACTTCGTGAT CTTCCCGCCG CGCTGGCTCG CCGCCGAAGA TACGTTCCGT
CCGCCCTGGT TCCATCGCAA TGTGGCAAGC GAGTTCATGG GCCTCGTGCA CGGCGTCTAC
GACGCCAAGG CCGAAGGTTT CGTGCCGGGC GGCGCGTCGT TGCATAACTG CATGTCGGGT
CATGGTCCCG ATGCGGAGAC GTTCGAGAAA GCCTCGCACA GCGATACGTC GACGCCGAAG
AAAGTCGGCG ACACGATGGC CTTCATGTTC GAAACCCGCA CGCTGATCAA GCCGACCCGC
TTCGCGCTCG AAACGGCGCA ATTGCAGGCG CATTACTACG AGTGCTGGCA AGGTCTCACG
AAACACTTCA ACCCGGAGCA ACGATGA
|
|---|
| Protein sequence | MDTPTRTPHN GRSRLEIEPG YQSGFANEFA TEALPGALPQ GRNSPQRAAY GLYAEQLSGT
AFTAPRGHNR RSWLYRIRPA AVHMPFTPLP SERLVANFAE VPPTPPNQLR WDALPMPAEP
TDFIDGWVTM AGNGAAESMT GCAIHVYAAN RSMQDRFFYT ADGELLIVPQ EGRLHIATEF
GKLDVGPFEI AVIPRGVRFA VSLPDGVARG YICENFGALL RLPDLGPIGS NGLANPRDFL
TPHAAYEDRE GDFELVAKMN GNLWRADIGH SPLDVVAWHG NYAPYKYDLR RFNTIGSISF
DHPDPSIFLV LQSQTDTPGV DSIDFVIFPP RWLAAEDTFR PPWFHRNVAS EFMGLVHGVY
DAKAEGFVPG GASLHNCMSG HGPDAETFEK ASHSDTSTPK KVGDTMAFMF ETRTLIKPTR
FALETAQLQA HYYECWQGLT KHFNPEQR
|
|---|
| |