| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_6820 |
|---|
| Symbol | |
|---|
| ID | 6248346 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010625 |
|---|
| Strand | - |
|---|
| Start bp | 1443047 |
|---|
| End bp | 1444855 |
|---|
| Gene Length | 1809 bp |
|---|
| Protein Length | 602 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642598481 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_001862883 |
|---|
| Protein GI | 186471565 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGTCG GTCAGGGAAC GCGGTTTAGC AAAGCTTACC TTCAACGGCA GAAAATCCAA
CTAGACCTAA CCGTGGGCTC AGAAATAATC TTCAACAAAC GGAGACACCC ACTCTTGCAA
CAGCAGCTCA TCGGCATGGA AATCTACGAC TACATCATTA TCGGAGCTGG CTCGGCTGGC
TGCGCACTCG CTCGCGGCCT TAGCGACGAC CCAGATAACA AAGTCTTGTT GCTGGAAGCT
GGGCCACCTG CCGACAGATT CTGGGTAAAC ACCCCTGCTG GAATGGCGAA GTTGTATTTT
CATAAAGAGC TGAATTGGAA CTATTTCACC GATCCGATGC CTGCACTTCG CAACCGGAAG
ATGTACTGGC CTCGCGGCAA GGCATTGGGT GGTTCGAGTT CGATTAACGG GATGATTTTC
ATCCGGGGGC ACCGTAACGA CTTCGACAGC TGGAGAGACC TGGGCAACCA GGGCTGGGGG
TACGATGACC TGCTGCCGTA CTTCAAGAAG ATGGAGCATA ACGAGCGTGG CGCCGACGAA
TTCCGCGGCA CAGGCGGTCC GTTGTGGGTG AGCGATCCCG TGACCAAAGT TCGAAGCTCC
TATGACTTCA TTAAGGCAAC TGAGCGTCTG GGCATCCCGC CCACCGATGA TTTCAACGGT
GCGGTGCATG ATGGCGTTGG TTTCATGCAG CACACGATTC GTGACGGACG ACGCTACTCC
GCCTACACCG CATTTGTCGC GCCGGTGCGC CATCGCCCGA ACCTTACTGT GCTGACGGGT
GCCGCGGTCC AGCGGATTGT ACTCAAGGGA AACGTCGCAA CAGGCGTGGA AGTCCTTGTC
GACGGACACC GTCGAACATT CGAAGCGGCG AGAGAGGTGA TTCTGTCTGC GGGGTCACTC
AATTCGCCGC AGGTACTTAT GCTCTCCGGC ATTGGACCGG GCGATGAACT CCGTCGGCAC
GACATCGAGA CTCTCGTTGA GATCCCCGGG GTTGGTCTTA ACCTCCAGGA CCACTTTTAC
GTCCACGGTA GTTATCGCTC GACGCCTGAC AGCTCTTACA ACCTGGAGCT TGGTGGCATC
AGAAAGTATT TCGAAGGGGC GCGTTACCTG TTGACCCATA AGGGCTATCT TGCGCTAGGC
TCGTCCCAAG TCGGAGCTTT TGTAAAGAGT CGACCAGACG AGTCATATGC TGACCTGCAA
ATCAGCTTCC GCCCGATGAC GTTCACCTAT CATCCGGGCG GTGAGTGTGA AGTCGACCAC
GAACCCGGCA TGGGAGTGTC CGTGTATCTG CTCAGACCAC GAGCCACGGG AACCGTCACA
TTGCGTTCGC CGAATCCGGC TGAACCGCCT GTGTTCAAAC CGAACTTTCT GAGCAACGAA
GACGACAATC GGGCAATGAT CGCGGGCGTG AAGATGATTC GCGAAATCAT GTCGACCGAG
CCGATCGCGT CGCGCGTCAT CGAAGAGGAA ATTCCGGGTC CGTTGGTGCA AACGGATGAG
CAGATTATGT ACTGGATGGA GATGACGGGA AATTCCGCGC ACCACCAGGC TGGCACCTGC
AAGATGGGCA ACGACAAGCT CGCCGTAGTG GATGAGCGTT TGCGGGTGCG GGGCGTCGAA
CGTCTGCGCG TCGCTGACGC ATCCATCATG CCGCATCTCA CTTCGGGCAA CACGAATGCC
CCTTCAATCA TGATTGGTGT AAAGGCGGCA GACATGATTT TGAGAGATGC CGTTCCTCGA
CGCGATATTC GGGAGGGTGC AGCGCCTGCC CGGAATGATG CGGTAAAGAG CGCGTCTGTT
TCCGTTTGA
|
|---|
| Protein sequence | MAVGQGTRFS KAYLQRQKIQ LDLTVGSEII FNKRRHPLLQ QQLIGMEIYD YIIIGAGSAG
CALARGLSDD PDNKVLLLEA GPPADRFWVN TPAGMAKLYF HKELNWNYFT DPMPALRNRK
MYWPRGKALG GSSSINGMIF IRGHRNDFDS WRDLGNQGWG YDDLLPYFKK MEHNERGADE
FRGTGGPLWV SDPVTKVRSS YDFIKATERL GIPPTDDFNG AVHDGVGFMQ HTIRDGRRYS
AYTAFVAPVR HRPNLTVLTG AAVQRIVLKG NVATGVEVLV DGHRRTFEAA REVILSAGSL
NSPQVLMLSG IGPGDELRRH DIETLVEIPG VGLNLQDHFY VHGSYRSTPD SSYNLELGGI
RKYFEGARYL LTHKGYLALG SSQVGAFVKS RPDESYADLQ ISFRPMTFTY HPGGECEVDH
EPGMGVSVYL LRPRATGTVT LRSPNPAEPP VFKPNFLSNE DDNRAMIAGV KMIREIMSTE
PIASRVIEEE IPGPLVQTDE QIMYWMEMTG NSAHHQAGTC KMGNDKLAVV DERLRVRGVE
RLRVADASIM PHLTSGNTNA PSIMIGVKAA DMILRDAVPR RDIREGAAPA RNDAVKSASV
SV
|
|---|
| |