| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_6541 |
|---|
| Symbol | |
|---|
| ID | 6248078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010625 |
|---|
| Strand | + |
|---|
| Start bp | 1123383 |
|---|
| End bp | 1125344 |
|---|
| Gene Length | 1962 bp |
|---|
| Protein Length | 653 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642598213 |
|---|
| Product | enterotoxin |
|---|
| Protein accession | YP_001862615 |
|---|
| Protein GI | 186471297 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3345] Alpha-galactosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.633739 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.541047 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCCC ATCACGCCTC TTTGGAACCT TCTGACGCGC CCCGCTTGCG TGTGCGAGGC
GAACGCTATG CGTTCGGCAA TGACGCGATC GAACTGGACT GGACCATCGC AGACGATAGT
CTGTGCGACG TTTGCCTCTT CGATCGTACG CATGGACGTG CTCTACAGAT CGACGCGCCA
TTCGTTCTCA CGTTAGCGGA TGGCCGCACG GTTGGGGCGG CCGGGTTGCG GCTCGTCGCG
CCCCTGCGCG AAGAAGCGTT GTGCGCGGAT GCCGATGCGC TGCGACAAGC CGAACGTCAT
GCAGGGCGGC GCGTGATCGC GACGTTCGGC GATAGCGAGC AGCGCCTGCG CGTCGAATGG
AGTATCGAGC AGCGCGACGG CGCACGTTAT CTTCGCCAGC ATCTGTCCAT CACTGCGCTG
TTGCAGGACG AGCATATTGC GTCCGTTGCA TTATGGCGGA CGTACGCGCC GTCTGCCCGA
AAAGCCGGCA ACCTCACGGC AGTGCCAGTC GTCGACGGGA ATGTGTATCT CGGCTTCGAG
CTTCCGATGG CGGAAAGCGA AATCCGCGAC GGCACCGTCT GCTTCAGCGT CACGCGCACA
CTGCCGCTCA AAAAGGGCAA GACGCTTGCT TATTCCGTTG TCGCAGGCGT GTTTCGCGAA
GGCCAGCTGC GCCGCGATTT CGCAACCTGC CTGGAGCGCG AACGTGCGCG ACCTTATTGT
CCCTTCCTGC ATTACAACTC CTGGTACGAC ATCGGCTTTC TCACGACCTA TACGCAGAAT
CAGGCCATCG AACGCATTCA CGCGACGGGC CGCGAACTGC ACGACAAGCG CGGAGTGCAA
ATCGATTCAT TCGTGTTCGA CGACGGCTGG GACGATTACA GCGGCACCTG GACGTTCAGC
GATGCATTTC CCAACGGCTT CGCGCCGTTG AGAGAGGCCG CGGCGCGCTA TGGCGCAGCA
CCCGGTGTAT GGTTGTCCCC TTGGGGCGGC TACGGCCCGC CTAAAACCGA GCGCGTGACG
CGCGGCCGCG CGACAGGATA CGAAACGGCC GGCGACGGCT TCGCGCTGTC GGGTCCGGCG
TACTATCGCC GCTTCCACGA AGTCGCGATG GATCTTCTGA CGAAACACGG CGTCAACCAT
TTCAAGCTCG ATGGCACGGG CAACGCGAAT ACGGTCGTCG CCGGCAGTCG TTTCAATAGC
GATTGGGATG CCGCGATAAG ACTCATCGAC GACATGCGCT GCGTGAATCG CGATGTGTTC
GTCAACCTGT CGACGGGCAC GCAGGCATCG CCATTCTGGC TGCGCTATGT CGATTCGATC
TGGCGGGACG GCGCAGATTG CGGTTTCGCC GGCAAGGGCA GCGAGCGCCA GCGCTGGATC
ACGTATCGCG ACGCGCAAAC GTACCGCAAC GTCGTGTGCC GAAGCCCGCT ATTTCCGCTC
AATTCGCTGA TGCTTCACGG CATCATCTAT GCGCAGGCCA ACGCACAACT CAACAGCGAT
CCCTCGCATG CGTTCGCGCA CGAAGTGCTT TCCTATTTCG GCAGCGGGAC GCAGTTGCAG
GAACTGTATG TCACGCCGTC GTTGCTGAGT GATCGCGACT GGGACGTGCT CGCGAAAGCG
GCCCGCTGGG CGCGCGCGCA TGCCGACGTA CTACGCGACT GCCACTGGGT CGGCGGCGCG
CCGGATGAAC TCGATGTCTA TGGCTGGGCT GCGTGGACGC CGTCGAAAGC GATCGTGACG
CTGCGCAATC CGGATGATCG TGCGAAAGAC TTCGCGCTCG ATCTGCAAGC GCATCTCGAA
CTGCCGGATG GTGTTGGAGG TCGGTTCACC GCACGATTTC CGTTCACAGA GCGCGATGCA
AACGTCGCAA CACAATGGGA CGCACGGCGC CCGCAAGCCA TACGCCTGGA CCCGTTTCAG
GTGCTGACGC TCGAACTCTC TCCCGTCGAG TGCGACGTTT GA
|
|---|
| Protein sequence | MQAHHASLEP SDAPRLRVRG ERYAFGNDAI ELDWTIADDS LCDVCLFDRT HGRALQIDAP
FVLTLADGRT VGAAGLRLVA PLREEALCAD ADALRQAERH AGRRVIATFG DSEQRLRVEW
SIEQRDGARY LRQHLSITAL LQDEHIASVA LWRTYAPSAR KAGNLTAVPV VDGNVYLGFE
LPMAESEIRD GTVCFSVTRT LPLKKGKTLA YSVVAGVFRE GQLRRDFATC LERERARPYC
PFLHYNSWYD IGFLTTYTQN QAIERIHATG RELHDKRGVQ IDSFVFDDGW DDYSGTWTFS
DAFPNGFAPL REAAARYGAA PGVWLSPWGG YGPPKTERVT RGRATGYETA GDGFALSGPA
YYRRFHEVAM DLLTKHGVNH FKLDGTGNAN TVVAGSRFNS DWDAAIRLID DMRCVNRDVF
VNLSTGTQAS PFWLRYVDSI WRDGADCGFA GKGSERQRWI TYRDAQTYRN VVCRSPLFPL
NSLMLHGIIY AQANAQLNSD PSHAFAHEVL SYFGSGTQLQ ELYVTPSLLS DRDWDVLAKA
ARWARAHADV LRDCHWVGGA PDELDVYGWA AWTPSKAIVT LRNPDDRAKD FALDLQAHLE
LPDGVGGRFT ARFPFTERDA NVATQWDARR PQAIRLDPFQ VLTLELSPVE CDV
|
|---|
| |