| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_6539 |
|---|
| Symbol | |
|---|
| ID | 6248076 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010625 |
|---|
| Strand | + |
|---|
| Start bp | 1121684 |
|---|
| End bp | 1122946 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642598211 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001862613 |
|---|
| Protein GI | 186471295 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.516365 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.497614 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAGC CCATGACCTC CGTCTCGCTG CGCAACGCGC CGGATGTCCC GACCGTCAGT
TACACGGAAC GCAATCAGCA ATACTGGATG CGCAATCTGT TCGTCTGCGT GTTCGGCTCT
TTCACGACGC TCGTCAGCCT GAGCATGCTG CTGCCGTTCC TGCCGCTCTA TGTGAAGCAG
CTTGGCGTGA CATCGCAGGC GGATGTGATC CAGTGGTCGG GTGTCGCGTT CGGTGCAACG
TTCCTCGGCA CGGCCCTCAC GGCGCCGTTG TGGGGCCGTC TCGCCGACCG TTACGGACGC
AAGCCGATGC TGATCCGCGC AGCCGTCGGC ATGGCCGTGG TGATGTCGCT GATCGGTATC
GCGCATAACG TCTACGAACT CGTCGGACTG CGGCTGGTTG CCGGTCTGGT CGGCGGCTAC
GCGTCGGCGT CGACTGTCAT GGTCGGCACA CAGGCGCCGC GCGAACGCGC CGGATGGGCG
CTGGGCCTGC TGTCGACGGG CTCGCTCGCG GGTGCCCTCG TCGGCCCGCT GATCGGCGGC
CTGCTGCCGG GCTGGATCGG CATACGCGGT ACGTTCTTCG CGGGCGGCGC GGTGATCGCC
GTCGCCGCAC TGCTGACGAT TTTCGTCGTC AGGGAAAATT TCCAGCCCGC CATCGACACG
AAGCGCAAAG CCGCGCGCAC CACTGCCGAA GCGAATGCGC CGCGCACCCG CTATGCCGTG
ATCGGCGCGC TGCTCGCGAC GGCAATGATG GTGTTGCTCG CCAATATGTC GATCGAGCCG
ATCATCACCG TCTATGTGGG CAGCCTTGGC GTCGCGCCGG ATCATCTGGC TCGCGTTGCG
GGTGTCGTGA TGGCGTGCTC GGCGTTCGGC AGCATGTTCA CGGCAGCGCG CCTCGGCGCG
CTTGCGGACC GGGTCGGCGG CTGGAACGTG ATCGTCGGTT GTCTCGTCGT GACGGGCCTC
GTGATGATTC CGCAAGCGTT CGTCGAACAA TGGTGGCAGC TGGCCGCGTT GCGCGCACTG
ATGGGCATGT CGCTCGCCGG TCTCTTGCCC GCGATCGCGA AATTGGCGCG TCATGCCGTC
GATGAAAGCC GTACGGGACA GATGCTCGGC TATCTGCAAT CGGCCCAGTT CAGCGGCCAG
GTGCTCGGCC CGGTGATCGG CGGAGAGATC GCCGTGCATC TCGGCATGCA CGCGGTGTTT
TTTGCGACGG GGTCGCTGCT GATCGTGTGC GCGGGATTCG CACGGTGGGC ACGTGAGCGG
TGA
|
|---|
| Protein sequence | MNQPMTSVSL RNAPDVPTVS YTERNQQYWM RNLFVCVFGS FTTLVSLSML LPFLPLYVKQ
LGVTSQADVI QWSGVAFGAT FLGTALTAPL WGRLADRYGR KPMLIRAAVG MAVVMSLIGI
AHNVYELVGL RLVAGLVGGY ASASTVMVGT QAPRERAGWA LGLLSTGSLA GALVGPLIGG
LLPGWIGIRG TFFAGGAVIA VAALLTIFVV RENFQPAIDT KRKAARTTAE ANAPRTRYAV
IGALLATAMM VLLANMSIEP IITVYVGSLG VAPDHLARVA GVVMACSAFG SMFTAARLGA
LADRVGGWNV IVGCLVVTGL VMIPQAFVEQ WWQLAALRAL MGMSLAGLLP AIAKLARHAV
DESRTGQMLG YLQSAQFSGQ VLGPVIGGEI AVHLGMHAVF FATGSLLIVC AGFARWARER
|
|---|
| |