Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphy_5776 |
Symbol | |
ID | 6247350 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phymatum STM815 |
Kingdom | Bacteria |
Replicon accession | NC_010625 |
Strand | + |
Start bp | 281686 |
End bp | 283209 |
Gene Length | 1524 bp |
Protein Length | 507 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642597486 |
Product | PDZ/DHR/GLGF domain-containing protein |
Protein accession | YP_001861888 |
Protein GI | 186470570 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.843261 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGCTTCACT CGACCCTGTC CCAGACCTGG CTTTGCACTG CCGTGACAGC GGCGTGTCTC GCCGCTTATT CCACCACCGA TGCGGCTACG AATGCAACGC ATACGGCCGC TGCCTCTTCG CCGGCGCCCG CATCGGCATC TGCAAAAGAG ACGCGAACCG CACCCGAAAA AACGCATGCG CCGATGGACT TCCCAGCGAT TGTCGAGCGC TACGGACCGG CCGTCGTGAA CATCCGCGCA ATCTTGCCGG ACAAGCCGCT GGCGGCCTCC GCGGTGCCAG CAGCACCTGC ACCCGCGTCG GGCACGAGTT CTGAAATCAT CGACGGCGAC GACCCGTTGT TCGCGTTCTT CCGGCAGGCG ATGCCGCAGG CGCAAGATGG CCAGAGCAGC TCGCCGCGTG CGATTTCGGG CGTGGGGTCG GGGTTCATCG TCAGCCCGAA CGGGTTGATT CTGACGACGG CGCATGTTGT CGACGGATCG GAAGACGTGA CGGTGCGCCT CACCGACCGG CGCGAGTTCA AGGCGAAAGT GGTAGCCGTC GATACGCAGA GCGACGTCGC GGTGATCCAG ATCGACGCAA CCAGACTGCC CGTCGTCAAG CTCGGCGACT CGACGCGCGT GCGCGTCGGC GAGCAGGTGC TGACGATTGG CTCGCCGGAC AGCTATCAGA ACACGGTAAC GGCGGGGATC GTCAGTGCAA CGTCGCGTAC GTTGGCCGAC GGCACGAAGT TTCCATTCTT CCAGACCGAC GGCGCATTGA ACCCGGACAA TTCGGGCGGC CCGGTGTTCA ACCGCGCCGG CGAAGTGGTC GGCATCCACG TGCAGGTCTA TGCCGACGGC GACCGCTTGC AGAGCCTGAC GTTCGCGATA CCGATCAACA TGGCGAACAA GGTACGCGCG CAGCTGCAGA CGCAAGACAA GGAAGCGCGC GGCGGCAGCT TCGGCATGCA GGTGCAGGAC GTCGATCCCG GCCTTGCGGG TGCGTTCGGC CTGCCGCGCG CAGCGGGCGC GCTCGTGATT GCCGTCGAAC CCGGCAGTCC CGCAGCGACG GGCAAACTGA AAGCGGGCGA CGTGATCGTG CAGGTCGGCG ATAAGCCAAT CGAGCATGCG GCCGATCTTA CCGATCAGGA TGCCGATCTG CAGGATGGGG CCAAAATTCC CGTCAAGGTG ATTCGCAATC GCAAGCAGAT CACGGCGATG ATCGGCGGGA CGGCATCTGC GCAGCCCGAG ACTGCGGGCG CAACGGATGA CGGCGCGCTC GATCATCTCG GTCTCAGCAT GCACCCGCTG ACGGACGACG AACGGCGCAC CACGGGACTG CCGCAGGGCC TGATGGTCGA CGACGTATCG GGAACGGGAG GCACGGCCGG CATCAAGCCG GGCGATGTGG TGCTGTCGCT GAACGGCACC CTGGTCGCGT CGCAGGACGA ACTTGCATCG CTTGCGGCGA AGGCGGGCAA GAAGGCAGCG TTGCTGATCC AGCGTAATCA CGCGCGCAGC TTCGTGTCCG TCAATCTCAA GTAA
|
Protein sequence | MLHSTLSQTW LCTAVTAACL AAYSTTDAAT NATHTAAASS PAPASASAKE TRTAPEKTHA PMDFPAIVER YGPAVVNIRA ILPDKPLAAS AVPAAPAPAS GTSSEIIDGD DPLFAFFRQA MPQAQDGQSS SPRAISGVGS GFIVSPNGLI LTTAHVVDGS EDVTVRLTDR REFKAKVVAV DTQSDVAVIQ IDATRLPVVK LGDSTRVRVG EQVLTIGSPD SYQNTVTAGI VSATSRTLAD GTKFPFFQTD GALNPDNSGG PVFNRAGEVV GIHVQVYADG DRLQSLTFAI PINMANKVRA QLQTQDKEAR GGSFGMQVQD VDPGLAGAFG LPRAAGALVI AVEPGSPAAT GKLKAGDVIV QVGDKPIEHA ADLTDQDADL QDGAKIPVKV IRNRKQITAM IGGTASAQPE TAGATDDGAL DHLGLSMHPL TDDERRTTGL PQGLMVDDVS GTGGTAGIKP GDVVLSLNGT LVASQDELAS LAAKAGKKAA LLIQRNHARS FVSVNLK
|
| |