| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_2120 |
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| Symbol | |
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| ID | 6243607 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010622 |
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| Strand | + |
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| Start bp | 2379057 |
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| End bp | 2381432 |
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| Gene Length | 2376 bp |
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| Protein Length | 791 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642593912 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001858343 |
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| Protein GI | 186476873 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00275819 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.0440432 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCAGT TCCGCCTCTC TTCCGCGCGC GACGTCAGGC ACCGCCTCGA TCCGGCGGGA
ACGCGCCGGC GCGCGCTGCT CGCGATTCCC GCGCTCGGCG TGCTGGTGCT CGTGCTGCTT
TGGACGGTGA TCTTCGCGCG GCTCTCGGTT GAAAAAGACA CGACGTATCG CGAGGCGATG
GCCTCGGCGG CCATTTTGTC CGCGGCACTC GAACAGCACA CGGTGAAGGC GATTCACCAG
GTCGACCAGA TCACGCGCTT CGTCAAATTC GAGTTCGAGA AAACGCCGGG CCATTTCGAT
CTCGCGAGCA CGGTCGAAAA AGGCGTCGTG CAAAGCGAGA CGCTCGTCCA GGTGTCGCTG
ATCGACGAGC ACGGCAAGCT GATCGCGAAC ACGGCGGAGG CAAATCCGAA GCCCATCGAC
CTGTCCGATC GCGAGCACTT CAAGGTGCAC GAGCACGAGA ACGACGACCA GCTCTTCATC
AGCAAGCCCG TGCTCGGCCG AGTGTCCGGC CACTGGACTT TGCAGATGAC GCGCCGACTG
AATCATCCCG ACGGTTCGTT CGCGGGCGTC GTGGTCGTAT CGGAAGACCC GAGCTATTTC
ACCAGCGACT TCTATAACAA CGCGGCCATC GGCCGCGACG GCGTGATCGC CGTGATCTCG
GATAGCGGCG CCGTGCTCGC GCGCCGTACT GGCAACTCCG ATCACACCCA GGGCGTATTC
ACGGCGACGG GTGTCTATCC CACTTCGGAG CACGTGTCGG GCACCTATGT GGATTCGATC
GACAACGTGA CGCGCATCGT GTCGTACCGG CATATCGACG GCTATCCGCT CGGCGTGCTC
GTCGGCCTGT CGCAGGCCGA AGAATTCGCG GACTACAACC ACACCCGCAA CGTCTATCTG
CTGATGGCGA GCTTTATCTC GCTCGCGATG CTCGGTTTCT TCGCCGTCGC CACCGGGCTG
ATCGGCAAGC TGCTCGGACG CGAGCGCGAG ATGACGCATC TCGTCGAATT CGATCTGCTC
ACGGGGTTGC GCAACCGCTA CTCGACCTTG CAGAGTCTGC GTCACGAGGT AGGACAACCG
GTGAACGTCG GGCATCTCGC GATCCTCTTC ATCGACCTCG ACAACTTCAA GACCGTCAAC
GACACGCTCG GCCATAACGC CGGCGACATC GTGCTGCAAA TGACGGCCTC GCGTCTCGCG
GATGCAGTCG CCGACGCAGG CGCGCTGTCG CGCATCGGTG GCGACGAGTT CGTCGTCGTG
ATCAAGGGCG ACGACGTCGA GAAGCGCGCG GTGACGCTCG CGGAAGCGAT CATCGACGTA
TTCGCAAAGC CGTTCGAAGT GCGCGGCAGT TCGTTCGTAC TGCATGCGAG CATCGGCATC
GCGCTCTACT CGGTCGCGAA CGAAAGCGAA ATCGACCTGC TGAAAAAAGC CGACCTCGCG
ATGTACAGCG CCAAGGACGC AGGCAAGAAC TGCTATCAGT TCTACTCACC GCATCTGTCG
CATCGCGCGG ACCATCTGAT GAAGTGGGAG CAGCAGTTGC GTGTCGCGCT GGCCGACCAG
CAGCTGTTCC TCGCCTATCA GCCGAAGATC GACCTCGCGC GCCGCTGCAT CACCGGCTTC
GAAGCGCTGG TGCGCTGGAA CCATCCGCAG CATGGCCTGA TTCCCGCGAA CGAGTTCATC
CCTGTCGCCG AATCCACGGG TCTGATCGTC CCCATCGGCG ATTTCGTGAT CCGCACGGCG
TGCCGGCAGC TTGCGCAGTG GCAGCAACAG GGTTACGACA CCCTGTCACT CGCCGTGAAT
ATTTCGGCGG TACAGTTCTG GCGCGGCGAT CTTTACGAAA CGATTTCGCA CGCAATCGAG
GAAACGGGCA TCGCCGCGCG CCGCCTCGAG CTCGAGATCA CCGAGACGGC GATGATGGAG
TACCCGGATC TCGTCTCCGA AAAGATCTTC GCGCTGAAGC GGCTCGGCGT GCGCATCGCG
CTCGACGACT TCGGCACCGG CTATTCGTCG CTGTCGTACC TGAACCGCTT CTCGGTGGAT
ACGCTGAAGG TCGACCGCTC GTTCGTGCAG GCCATTCCCG GCGACCGCAG CGTCTGCGTA
ATGGTGACGG CCATCGTCAA CCTCGCGCGC TCGCTGGGGC TGACGGTCGT GGTCGAAGGC
ACGGAGACGG AAGAACAGAT CGCGTGGCTT GCCGCACTCG GCCATATCGA GGCGCAAGGT
TTCCTGTTTT CGCGGCCCGT GCCCGCCGAG GGTATTCCCG CGCTGCTCGA ACGCTTCGGC
GTGTGCGGCA CGCACGGTGC GCATCTCACG CATCGCGGCG ACGCCGTCAG CACCAGCGAT
GCCGCGAGCA CCAGCACGAG CAACGAATCG GTCTGA
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| Protein sequence | MNQFRLSSAR DVRHRLDPAG TRRRALLAIP ALGVLVLVLL WTVIFARLSV EKDTTYREAM
ASAAILSAAL EQHTVKAIHQ VDQITRFVKF EFEKTPGHFD LASTVEKGVV QSETLVQVSL
IDEHGKLIAN TAEANPKPID LSDREHFKVH EHENDDQLFI SKPVLGRVSG HWTLQMTRRL
NHPDGSFAGV VVVSEDPSYF TSDFYNNAAI GRDGVIAVIS DSGAVLARRT GNSDHTQGVF
TATGVYPTSE HVSGTYVDSI DNVTRIVSYR HIDGYPLGVL VGLSQAEEFA DYNHTRNVYL
LMASFISLAM LGFFAVATGL IGKLLGRERE MTHLVEFDLL TGLRNRYSTL QSLRHEVGQP
VNVGHLAILF IDLDNFKTVN DTLGHNAGDI VLQMTASRLA DAVADAGALS RIGGDEFVVV
IKGDDVEKRA VTLAEAIIDV FAKPFEVRGS SFVLHASIGI ALYSVANESE IDLLKKADLA
MYSAKDAGKN CYQFYSPHLS HRADHLMKWE QQLRVALADQ QLFLAYQPKI DLARRCITGF
EALVRWNHPQ HGLIPANEFI PVAESTGLIV PIGDFVIRTA CRQLAQWQQQ GYDTLSLAVN
ISAVQFWRGD LYETISHAIE ETGIAARRLE LEITETAMME YPDLVSEKIF ALKRLGVRIA
LDDFGTGYSS LSYLNRFSVD TLKVDRSFVQ AIPGDRSVCV MVTAIVNLAR SLGLTVVVEG
TETEEQIAWL AALGHIEAQG FLFSRPVPAE GIPALLERFG VCGTHGAHLT HRGDAVSTSD
AASTSTSNES V
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