| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_3088 |
|---|
| Symbol | |
|---|
| ID | 6198816 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | + |
|---|
| Start bp | 3526295 |
|---|
| End bp | 3528802 |
|---|
| Gene Length | 2508 bp |
|---|
| Protein Length | 835 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641707035 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001834138 |
|---|
| Protein GI | 182679992 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.285455 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0146204 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACGC TCTACACATC CTATAATGAC GACCCGCAAT CCAAGCTTTT GGCCCAAGTC
AATCGGGAAC TGATTGCTAT CAAGGCAGAG CGGCGCCATT GGCCTAACGG AACAAGGCGC
TCCTTAAACC ACTGCCTCGC AATAAGTCAT CTGTGGACAG GGCTTTGCCT CTCGCAATCC
GTATTAGCCC AACAGGCTTC TTCCACACAA GCAACGCCCA GCGGAGCGCA ATTACAGGTC
GAGGATGTCC AAGTCATTGG ATCCAATCAA GTTGATCAAA ACCAAAATGT CCCGATACCG
ATAACAACAA TTTCGGCCAG TCAAATCCAA GCGACACATG TCTTCAATCT GCGCCAGATA
GCGGCGCAAG TGCCAAGTCT CCAGATTCAA GGCTTCAATC CACGCAATGC CACATTAACG
ATCCGTGGCC TGGGCAGCAA TACCGGTATC GTGAACTCAG GCCTGGAACA GGGTGTCGGA
ATCTATATTG ATGGCGTTTA TTATGCGCGT CCCGCAATTA CCGTTTTTGA TCTCTGGGAT
CTCAGCGGCG TCGAAGTGCT GCGTGGCCCG CAAGGGACGG CCTTTGGTAA AAATGCGACT
GCGGGAGCCA TTAATATTTC CACAGAGCTG CCGACCTTCG CGCGGACGAT GAAGGCAGAT
TTTTCCGTTG GAAACTGGGG ATATACGCAA TTTCGCGGCG CTGTCAGCAG CCGTATCGCG
GATAGTGATT TTGCTTTCCG TCTTGCTGGC TATGTCACGA ACCGAAATGG CAATATCTAT
AATTCCACTC ACCACGAATA TTGGAATGAT CTTCATTCAG GAGGTGTCAA GGCACAGATC
CTTTTTGAAC CCAGTGAAGA TCTCCGTGTC CGTGTGATTG GAGATTACAA TGCACAAAAA
GAGGAAAGCG GCTTTTCCAT TATCAAACAA GCCTTGCCGA CAACACTTGC TAATGGATCA
AGTGTCGTCG GTTATTATGA AAAAGCTGCA CGTTTTCCAG ACTATAATGC TGTGATTGCC
AATCCTTCTG ACCGTGTGAC ACCGATTGAT TCTGATCATA CCCTTGTCAT GAACACAGGC
GGCATTTCGG TTCAGGCCGA TGCGAAGATC TTCGACGCAC ACCGCTTGAC CTCGATCACC
GCCTTTCGCT GGTGGGGCTG GAACTCCTCA CTGGATGGTG ACTCCCTGGG GCTGCCGATC
CAGACCGCGG CCAATCTGCC GACGTTCCAG CGACAGGTCA GCCAGGAAAT CCGTCTCGCC
TCCCCTGAAG GAGGAGCGCT CGACGGTCAT CTTGATTATA CGCTCGGCTT TTTCTATTTC
TGGCAACATA ATCGAGAGCA TCAGTACAAT GCCTGGGGAC AGGCCGCGAG TACCTGGTAT
CTTGGTGCCA ACGCTCCCAT CTCGGCCTTG AATGGCCTGA CGTCCCTCGG CGATATTTCT
TCGACAACGA ACAGCTATTC TGGTTTTGGT CAGGCCACTT TTCATATCCT GCCAGATTTC
GACCTGACGG CAGGTCTGCG TTACAATGAC GATGTCAAGA ACGGAACCTA CAATGCCTGG
CAGGGAAACA ACGCGGTTCC AATCGCGCAA CTGCCCGCTG CTTATCAAGC TTCCGCGGCG
AGTCTGCGGA ATAATCTAGC ACCCACCACA GCCTATTCGG CCTTTGCTGA GAGCGGGAAT
TTTTCTGGCA CCGCCAAATT GTCCTACCGC TTCAACGACC AGCTTTTTGG TTACGCAAGT
TATGCGCATG GATTTATCGG CCCAGGACTC AATCTCACTC CTGTGACTGG AACGTCCGGG
ATTAGTCCGG TTGTCGCGCC GGAAACTGTC GATTCCTACG AAGTCGGTGT CAAGACCGAT
TGGTTGGATC ACCGACTCAG CCTCAATGCC AATTTGTTTC TGCAACTGGC CGATAATTAC
CAAGCATCCA CCTATGCCTA TATTGGATCC CGTTATGTCT CTTATATCGG TAATGTCGGG
CGGATCAGGA CGCGCGGCTT TGAGATCGAT TCCCATGCAC AAATTACAGA TGATCTGACG
GCGACATTTT CGGCCACCTA TAATGATGCG ACCTTTCTTT CCTATCCCAA GGCGCAATGT
CCGTTTGCCT ATTCCTATCT ATCGACCTGT GATCTTTCTG GCCAACCTCT CACCGGCGTT
TCTCGCTTCG CTCTCTTTCT TGGCGCGGAA TACAAGCATT CCATAGGGCA TTATGCAGAC
CAGGATATTA TTGGTTATAT CGGTGGAGAT TTGACCTATC GCTCATCGTT CTTTTCCACA
CTCAATGATG ACCCTTTTGG TCTCGTGCCT GCCTATAGTG TCATCGGCCT CCACGCCGGC
TTCCGCACAC AAGATGGTAA TTATGATGTA GCCTTCTGGG TGAAGAATCT CGCCAACACG
ACTTATTACG CGCAAATCTC TGTTGGCAGC TCCAGTGCGG TGCCCGTGGC GACAGCAATC
CTTGGTGATC CACGTCAGGT TGGCATGACA ATCAGTGCCA AGTTCTAA
|
|---|
| Protein sequence | MKTLYTSYND DPQSKLLAQV NRELIAIKAE RRHWPNGTRR SLNHCLAISH LWTGLCLSQS
VLAQQASSTQ ATPSGAQLQV EDVQVIGSNQ VDQNQNVPIP ITTISASQIQ ATHVFNLRQI
AAQVPSLQIQ GFNPRNATLT IRGLGSNTGI VNSGLEQGVG IYIDGVYYAR PAITVFDLWD
LSGVEVLRGP QGTAFGKNAT AGAINISTEL PTFARTMKAD FSVGNWGYTQ FRGAVSSRIA
DSDFAFRLAG YVTNRNGNIY NSTHHEYWND LHSGGVKAQI LFEPSEDLRV RVIGDYNAQK
EESGFSIIKQ ALPTTLANGS SVVGYYEKAA RFPDYNAVIA NPSDRVTPID SDHTLVMNTG
GISVQADAKI FDAHRLTSIT AFRWWGWNSS LDGDSLGLPI QTAANLPTFQ RQVSQEIRLA
SPEGGALDGH LDYTLGFFYF WQHNREHQYN AWGQAASTWY LGANAPISAL NGLTSLGDIS
STTNSYSGFG QATFHILPDF DLTAGLRYND DVKNGTYNAW QGNNAVPIAQ LPAAYQASAA
SLRNNLAPTT AYSAFAESGN FSGTAKLSYR FNDQLFGYAS YAHGFIGPGL NLTPVTGTSG
ISPVVAPETV DSYEVGVKTD WLDHRLSLNA NLFLQLADNY QASTYAYIGS RYVSYIGNVG
RIRTRGFEID SHAQITDDLT ATFSATYNDA TFLSYPKAQC PFAYSYLSTC DLSGQPLTGV
SRFALFLGAE YKHSIGHYAD QDIIGYIGGD LTYRSSFFST LNDDPFGLVP AYSVIGLHAG
FRTQDGNYDV AFWVKNLANT TYYAQISVGS SSAVPVATAI LGDPRQVGMT ISAKF
|
|---|
| |