Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bind_0894 |
Symbol | |
ID | 6198242 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
Kingdom | Bacteria |
Replicon accession | NC_010581 |
Strand | + |
Start bp | 1017855 |
End bp | 1021376 |
Gene Length | 3522 bp |
Protein Length | 1173 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641704891 |
Product | transcription-repair coupling factor |
Protein accession | YP_001832032 |
Protein GI | 182677886 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.180496 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.440454 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCGATT TCAAACGCGC CGTCGCCGAA CTCGCTAAGG GCGGCTCCCT GACTTTGGCT TCCGTGGCCG ATGGCTACGA CGCCTTTTGC CTCGCCGATC TGATTCATGC CTGTGCCCGT GCCGGCGAGG AACGCTCCGT GGTGCTGGTG CATGTGGCGC GTGACAGCAC GCGGGCGCGG GCCTTTGGCG AGGCTCTGGC CTTTGCGGCG CCGGATGTCG AAATCCTCGA CCTGCCGTCC TGGGATTGCC AGCCTTATGA CCGCGTCTCG CCAAACGCGG CGATTGCCGC CAAACGGATG ATGGTGCTGG CGCGTCTCGC CCGTTCGCGC TCCTCCCTGG AACGGCCGCG CATTCTCTCG ACCACCGTCA ATGCCTTGGT CCAGCGCTTG CCGCCCTTGC GCTTCATCGC CGCCAATACT TTTTCAGCCG CGCCCGGCAA TGCCGTCGCG CTCGATGGCC TTGCGGCCTG GCTCGAGACC AATGGCTTTG CACGGTCCTC GACCGTGCGG GATACCGGCG AATATGCAGT GCGCGGCGGC ATTGTCGATC TTTACGCGCC CGGCATGGCG CAGCCGGTCC GGCTCGATTT CTTTGGCGAT ACGCTGGAAT CCATCCGTTC CTTCGATCCG GAAACCCAGC GCACCATTGG CCAATTGCGC GCGCTCGATC TTGTGCCGAT GAGCGAGGTG CAACTGACCA CCGAGACGAT CCGCCATTTC CGCCAGGCCT ATGTCGCGCG TTTCAATGCG CAGACGCGCG GCGATACGCT TTATGAGACG ATCAGCGAGG GACGAAGGCA CCCAGGCTGC GAACATTGGC TGCCTCTGTT CTACGACCAT CTCGATACAT TGTTCGATTA TGTCGGCGGC GCGCCTTTCG TACTCGATCC GCAGGCCGAG GAAGCGGCGA AACAACGGCT CGCGCAGATC AAGGATTATT ATGAGGCCCG CAAATCGGCC TATGACGCCG ACCCGGCCCA TGTGGCCTAT AAGCCTCTGC CGCCCGATGC ACTTTATCAG ACGCCGGAGC AATGGGGCAA AACGCTGTCC CTCACCAGCC TCGTGCGCAT TTCGCCCTTC GCCGTGCCGC CGGATTCTTC GCGCGGCCCT GTCGTTGATC TGAATTCCAA ACCCGGACGC AGTTTCGCCG CCGAGCGGGC CGATCCCGAG GCCAATGTGT TCGAGGCCGC GCTGACCCAT GTGCGGGCCC TGCAAGGCGC GGGCAAGCGC GTGATCCTCG CCGCCTGGAC GGATGGCTCG CGTGAGCGGC TTGCCCATGT CATGGCCGAT CATGGCCTCA AGGATCAGGA AACAATTTCC TCCTTCACCC AGGCGCAGGC GCTGAAACCC TCCACCGTGG CGCTCGGCGT CATCGGCCTG GAACAGGGTT TTGAGGCGGA AGGGCTTGCC GTCGTCGGCG AGCAGGACAT TCTGGGCGAC AGGATCGTGC AGACGCGCCG CAAAGTCCGC CGCGCCCAGG ATTTCTTGAG CGAGGTCGCC TCGTTGCAGG CGGGCGATCT GGTGGTCCAT GTCGAACATG GCATCGGCCG GTTCATTGGC TTGCAGACCA TCGAGGCGGC GGGCGTGCGC CATGATTGCC TGGAACTGCA TTATGCCGAA GGCACAAAGC TTTTCCTGCC CGTCGAAAAT CTCGAATTAC TTTCGCGCTA TGGCTCGGAA GAATCCGATG TCCCGCTTGA CCGTCTCGGC GGTGGCGCCT GGCAGAAGCG CAAGGCGCGG ATGCGCCGGC ATATTCTCGA AATGGCCTCT GGTCTCATCA AGGTTGCCGC CGCGCGCGAG ACAAGGGAAG CGCCGAAACT GGTGCCACCC GAAGGGCTCT ATGCCGAATT CTGTTCAGGT TTCCCTTACG AGGAAACCGA GGACCAGCAG GCCACCATCG ACTCGGTTCT GGAGGATCTT TCCTCGGGCA AGCCGATGGA CCGCCTTGTC TGCGGAGATG TCGGTTTCGG CAAGACGGAA GTGGCGCTCC GCGCCGCCTT CGACACGGCG ATCAATGGCA AACAAGTCGC CGTCATCGTG CCGACGACTC TCTTGGCCCG CCAGCATTAC AAGAATTTTT CAGCCCGTTT CGCGCATCTG CCGGTCACAG TCGCGCAAAT GTCGCGCATG GTCTCCGCCG CCGATCTCAA AGCCGCCAAG GCAGGCATTT CCTCGGGCAA TGTCGATATT ATCGTCGGCA CTCATGCCGT GCTGGGCAAG GGGATCACGT TCAAGGATCT CGGCCTCGTC ATCATCGACG AGGAACAGCA TTTTGGGGTC AAGCACAAGG AACGCCTAAA GGAACTCCGC GCCGAAGTGC ATGTGCTGAC CCTTTCGGCA ACGCCGATCC CGCGCACGCT GCAGCTCGCC ATGACCGGCG TGCGTGATCT CTCGATCATC GCCACGCCGC CGGTCGATCG TCTGGCCGTG CGTACCTTCA TTTCGCCCTT CGATGATCTT TTGGTCCGCG AAGCTCTGTT GCGCGAGCGT TATCGCGGCG GGCAGAGTTT TTATGTCGCC CCGCGCATCG AAGATCTCGA GGATGTCGCG ACATACCTGC GCACCCATGT GCCGGAGGTC AAATTCGTGG TCGCGCATGG ACAAATGGCG GCGACCGAGC TCGAAGATAA AATGGCCGCC TTCTATGAGG GCAAATATGA TGTGCTGCTC TCAACCGCCA TTGTCGAATC CGGTCTCGAT ATTCCAACCG CTAACACTTT GATCGTGCAT CGCGCCGATA TGTTCGGCCT TGCCGCGCTC TATCAATTGC GTGGCCGCGT TGGCCGCTCG AAAATCCGCG CTTACGCGCT CTTCACTGTG CCGCCGAATA AGACCCTGAC GCCACAGGCC GAGCGGCGGC TGAAAGTGCT GTCCTCGCTC GACACGTTGG GTGCGGGCTT CCAGCTTGCC AGCCACGATC TCGATATTCG CGGCGCCGGC AATCTGCTCG GCGATGCGCA ATCGGGCCAT ATCAAGGAAG TCGGCTATGA ACTCTATCAG CAAATGTTGC AGGAGGCGGT CGAGGCCCTG AAGTCGGGCA TAGAGGCGCC GGTCGAGGAA GCCTGGTCGC CGACCATCAC GCTCGGCACG CCGGTCACGA TTCCAGAAGA TTATGTGCCC GATCTGCAAT TGCGTCTGAC GCTCTATCGC CGCCTCTCGA CCATCGAAAG CGAGGCGGAA ATCGAAAGTT TCGCCGCCGA AATGATCGAC CGTTTTGGGC CCATGCCGAA GGAGGTCGAG CAATTGATGC AGCTCGTCGC CATCAAACTA TTGTGCCGCA AGGCGCATGT GGAAAAAGTG GATGCGGGCC CCAAGGGCGT CATCATCGGC TTCCGCGACA ATGCTTTCGC CAATCCGCAA GGGCTTGTTC GCTATGTCGC GCAGCAAGGG TCTGAGGCCA AGGTGCGCGC GGATATGAAG ATCGTCTTCT CCCGCGATTT CGCCAATCCC AATGTCAGGC TGGAAGGCAC GAAACAGCTC GTGCGCACAC TCGCGGCCAT AGCCATGAAA CAGGCGGCAT GA
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Protein sequence | MTDFKRAVAE LAKGGSLTLA SVADGYDAFC LADLIHACAR AGEERSVVLV HVARDSTRAR AFGEALAFAA PDVEILDLPS WDCQPYDRVS PNAAIAAKRM MVLARLARSR SSLERPRILS TTVNALVQRL PPLRFIAANT FSAAPGNAVA LDGLAAWLET NGFARSSTVR DTGEYAVRGG IVDLYAPGMA QPVRLDFFGD TLESIRSFDP ETQRTIGQLR ALDLVPMSEV QLTTETIRHF RQAYVARFNA QTRGDTLYET ISEGRRHPGC EHWLPLFYDH LDTLFDYVGG APFVLDPQAE EAAKQRLAQI KDYYEARKSA YDADPAHVAY KPLPPDALYQ TPEQWGKTLS LTSLVRISPF AVPPDSSRGP VVDLNSKPGR SFAAERADPE ANVFEAALTH VRALQGAGKR VILAAWTDGS RERLAHVMAD HGLKDQETIS SFTQAQALKP STVALGVIGL EQGFEAEGLA VVGEQDILGD RIVQTRRKVR RAQDFLSEVA SLQAGDLVVH VEHGIGRFIG LQTIEAAGVR HDCLELHYAE GTKLFLPVEN LELLSRYGSE ESDVPLDRLG GGAWQKRKAR MRRHILEMAS GLIKVAAARE TREAPKLVPP EGLYAEFCSG FPYEETEDQQ ATIDSVLEDL SSGKPMDRLV CGDVGFGKTE VALRAAFDTA INGKQVAVIV PTTLLARQHY KNFSARFAHL PVTVAQMSRM VSAADLKAAK AGISSGNVDI IVGTHAVLGK GITFKDLGLV IIDEEQHFGV KHKERLKELR AEVHVLTLSA TPIPRTLQLA MTGVRDLSII ATPPVDRLAV RTFISPFDDL LVREALLRER YRGGQSFYVA PRIEDLEDVA TYLRTHVPEV KFVVAHGQMA ATELEDKMAA FYEGKYDVLL STAIVESGLD IPTANTLIVH RADMFGLAAL YQLRGRVGRS KIRAYALFTV PPNKTLTPQA ERRLKVLSSL DTLGAGFQLA SHDLDIRGAG NLLGDAQSGH IKEVGYELYQ QMLQEAVEAL KSGIEAPVEE AWSPTITLGT PVTIPEDYVP DLQLRLTLYR RLSTIESEAE IESFAAEMID RFGPMPKEVE QLMQLVAIKL LCRKAHVEKV DAGPKGVIIG FRDNAFANPQ GLVRYVAQQG SEAKVRADMK IVFSRDFANP NVRLEGTKQL VRTLAAIAMK QAA
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