| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_6327 |
|---|
| Symbol | |
|---|
| ID | 6125250 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010512 |
|---|
| Strand | - |
|---|
| Start bp | 339461 |
|---|
| End bp | 340489 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641647340 |
|---|
| Product | D-xylose ABC transporter, periplasmic substrate-binding protein |
|---|
| Protein accession | YP_001773937 |
|---|
| Protein GI | 170734823 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02634] D-xylose ABC transporter, substrate-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.446437 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.888302 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCG TGACGCGTCG TACCGTACTG AATTCCCTTG CCGGCGCCGC CGCGCTGGCG
ATCCTCACGC TGGGCTCGCC GCTCGCCCAC GCGAGCAAGG ACAAGCCCGA GATCGGCTTC
TGTATCGACG ACCTGCGCGT CGAGCGCTGG TCGCGCGATC GCGACTATTT CGTCGCGGCC
GCGACGAAGC TCGGCGCGAA GGTGTCGGTG CAGTCGGCCG ATGCGAACGA GGCGCGGCAG
ATTTCCCAGA TCGAGAACCT GATCTCGCGC GGCGTCGACG TGATCGTGAT CGTGCCGTTC
AACTCGAAGA CGCTCGGCAA CGTCGTCGCC GAAGCGCGGA AGGCCGGCAT CAAGGTCGTG
TCGTACGATC GCCTGATCCT CGACGCCGAC GTCGACGCGT ACATCTCGTT CGACAACGAG
AAGGTCGGCG AGCTGCAGGC GCAGGGCGTG TTCGACGCGA AGCCGAAGGG CAACTATTTC
CTGCTGGGCG GCGCGCCGAC CGACAACAAC GCGAAGATGC TGCGCGAAGG ACAACTGAAG
GTGCTCAAGC CCGCGATCGA CCGCGGCGAC ATCAAGGTGG TCGGCCAGCA GTGGGTGCCC
GAATGGAGCG CGTCGACCGC ACTGCGGATC GTCGAGGACG CGCTGACCGC GAACAACAAC
AAGATCGACG CGATCGTCGC GTCGAACGAC GGCACGGCCG GCGGCGCGAT CCAGGCGCTC
GCCGCGCAGC ATCTGGCCGG CAAGGTGCCG GTGTCCGGGC AGGATGCGGA TCTGGCCGCG
GTCAAGCGCG TGATCGCCGG CACGCAGACG ATGACCGTCT ACAAGCCGCT GAAGCTGATC
GCGAGCGAAG CCGCGAAGCT CGCGGTCGAT CTCGCGAAGG GCACGAAGCC CGCGTTCAAC
GCGCAATACG ACAACGGCAA GAAGAAGGTC GACACGGTGC TGCTGCAGCC GACGCTGCTG
ACCAAGCGCA ACGTCGACGT CGTCGTGAAG GACGGCTTCT ATACCCAGGC CCAGCTGGCG
AGCCAGTAA
|
|---|
| Protein sequence | MKTVTRRTVL NSLAGAAALA ILTLGSPLAH ASKDKPEIGF CIDDLRVERW SRDRDYFVAA
ATKLGAKVSV QSADANEARQ ISQIENLISR GVDVIVIVPF NSKTLGNVVA EARKAGIKVV
SYDRLILDAD VDAYISFDNE KVGELQAQGV FDAKPKGNYF LLGGAPTDNN AKMLREGQLK
VLKPAIDRGD IKVVGQQWVP EWSASTALRI VEDALTANNN KIDAIVASND GTAGGAIQAL
AAQHLAGKVP VSGQDADLAA VKRVIAGTQT MTVYKPLKLI ASEAAKLAVD LAKGTKPAFN
AQYDNGKKKV DTVLLQPTLL TKRNVDVVVK DGFYTQAQLA SQ
|
|---|
| |