| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_6156 |
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| Symbol | |
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| ID | 6125130 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia MC0-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010512 |
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| Strand | + |
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| Start bp | 156847 |
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| End bp | 158529 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641647174 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001773771 |
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| Protein GI | 170734657 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0572523 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATGC ATCGACGCGG CCGTCGCCGA CATTCGCTAC CCGCACGCGG GATCGCCGCG
ATGCTCGCCG CCTGCGCGGT GCTCGCGGGC TGTACCGTCG GACCGGATTT CAAGCCGCCG
CAGGCGGACG CGCCGGCCAA CTGGCATGAC TTGCAGGCCG CGGACGCGGC ATCGCCGGCA
TCGGGCGCGT CAGCGGCATC GGCTGCATCA GCGGCATCGG CCCCCGGCGC ACATGCGCCA
TCGTCGCCGG TGACGAGCGC CGATCCCGAT CCGCGCTGGT GGCGCGCGTT CGGCGATCCG
CTGCTCGACC AGCTGGTCGA GCGCGCCGCG CATGACAACC TCGACGTGCA GGCCGCCGTG
CTGCGCATCG CCCAGGCACG CGCGCAGGTC CGCGCGGCCG CCGCGCAGGG TTTGCCGGAC
GTGCGTGCGA CCGCGAGCTA CCAGCGCGAA CAACTCGGCC TGAAAGGGAT CGTCGAGGAG
CAGGGCATTG ACCAGCGGGT CGATCGTCTC GGTGCGCCGG GCTCGCCGCT CGACCGGTTC
GGGCCGGGCA CCGGCGCGAG CGTGCAGCAA GGCGCGCGCG GCGCGCTCGA TGCGCTCGAA
GCGCCGGTCA ACCTGTGGCA GGCCGGGTTC GACGCATCGT GGGAGCTGGA CCTGTTCGGC
CGGGTGCGCC GCTCGGTCGA AGCGGCCGGC GCGCAGGCGA GCGCGGCGAT CGCGAGCCGC
GACGATGCGC TGCTGTCGCT GGAGGCCGAA GTCGCGCAGA CCTATCTGCA ACTGCGCGGC
GCGCAAGCGC AGCGCGCGCT GGCCGACGAT CTGCAACGCG CGCAGCGGGA ACTGCTCGAC
CTGACGCGCG AGCAGGCCGC GCACGGTCTC GCGAGCGATC TCGACGTGCG CAGCGCCGAG
GCGCGGCTCG CACAGATCCG CGCGCAACTG CCGCAGTTCG ACCAGCAGAT CGTGCTGCTG
CGCAACGGTC TCGCGTATCT GGTCGGCGGC GCGCCGGGCG CGCTCGACGA CTGGCTCGAC
GCGCCGCGCG CGTTGCCGGA CGTGCCGCCG ACCGTGCCCG TCGGGCTGCC GTCGACGCTC
GCGCGCCGGC GGCCCGACAT CCGCCGCGCG GAGGCCGAAC TGCATGCGGC CACCGCCGAC
ATCGGCGTCG CGGTCGCGCA GTTCTATCCG GACATCTCGT TGACCGGGCA GGTCGGGCTG
CGCGCGTCGC ACGTGCGCGA GCTCGCGCAC TGGTCGCACC TGTTCTATTC GTTCGGGCCG
GCCGTCTCGC TGCCGATCTT TTCCGGCGGG CAGCTCGTGT CGAACCTGCG GCTGTCGCAG
GCGCGCCAGG CGGAAGCGGC GCTCGCCTAC CGCCAGGCCG TGCTCGTCGC GCTGCGCGAC
GTCGACAATG CGCTGGCCGT GTACCGCACC GACCAGGCGC GCGCGGCCGC GCTCGACGAT
GCGGTGAAGG CCGAACAGGG CGCGCTGGAT CTCGCACGCG ATCGCTACAG GAAAGGGCTG
TCGCCGTTCC TCGACGTGCT GGACGCCGAG CGGCAATGGT CGGAAGGCCG GCAGCAGGCC
GAGCAGGGCG CGTTGCAGAA GACGACCGAT CTCGTCGCGC TGTACAAGGC GCTCGGCGGC
GGATGGGAGG CCGGCTCGGG CACGAACTCG GATGCGGGGG CAGAGGCGGC ACGCACCAGA
TAG
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| Protein sequence | MTMHRRGRRR HSLPARGIAA MLAACAVLAG CTVGPDFKPP QADAPANWHD LQAADAASPA
SGASAASAAS AASAPGAHAP SSPVTSADPD PRWWRAFGDP LLDQLVERAA HDNLDVQAAV
LRIAQARAQV RAAAAQGLPD VRATASYQRE QLGLKGIVEE QGIDQRVDRL GAPGSPLDRF
GPGTGASVQQ GARGALDALE APVNLWQAGF DASWELDLFG RVRRSVEAAG AQASAAIASR
DDALLSLEAE VAQTYLQLRG AQAQRALADD LQRAQRELLD LTREQAAHGL ASDLDVRSAE
ARLAQIRAQL PQFDQQIVLL RNGLAYLVGG APGALDDWLD APRALPDVPP TVPVGLPSTL
ARRRPDIRRA EAELHAATAD IGVAVAQFYP DISLTGQVGL RASHVRELAH WSHLFYSFGP
AVSLPIFSGG QLVSNLRLSQ ARQAEAALAY RQAVLVALRD VDNALAVYRT DQARAAALDD
AVKAEQGALD LARDRYRKGL SPFLDVLDAE RQWSEGRQQA EQGALQKTTD LVALYKALGG
GWEAGSGTNS DAGAEAARTR
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