| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_3387 |
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| Symbol | |
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| ID | 6126121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia MC0-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010515 |
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| Strand | + |
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| Start bp | 240152 |
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| End bp | 241687 |
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| Gene Length | 1536 bp |
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| Protein Length | 511 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641650496 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001777031 |
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| Protein GI | 170735771 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.366647 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTACGC CACGCCCCAC TCCCCGGGCG GACACACCGC TCGATCCGAT CATCCAGCTG
CTGGCGCTCG CCGGCGAGCA GGGTTATCTG ACGCACGCCG ACCTCGTCGA CGCGCTGCCG
CCCGAAAGCG ACAGCCCCGA CGCGCTCGAC GTCGTGCGCG CCGCGCTGGC CGACATCGGC
ATCGCGGTAC TCGACGAGCC GGCCGTGCCT GCACCGTTTG CCGGCGCGGC GCCGGTCGAG
GTCGATCGCG ACGCGCTCGA CGAAGGCCGG GCCATGCTCG GCGACCTCGC ACGCGGTACG
AGCGCGTCGA CCGATCCGCT CGCGCTCTAC ATGCGGCGCA TGCATGCGGT GCCGCTGCTC
ACGCGCGAAG GCGAAATCGT GCTCGCCCGC GAGATCGAGA CGGGCCGTCA TCAGGTGCTG
CACGCGATTG CCGGCTATCC GCCCGCGGTC GACGTGCTGC TCGAGCGTCA TCGCACGAGG
AGCGCAACCG GCGCAAACGG ATCGCCCGAC GAAGAGGATG GCGAAACGCC CGCGCCCGCC
CGCTACGACG CGCTGCAGGC AGCGGTGTCG GCACTGCGCG ATGCACTGCA TGCGCATGGC
AGCCGTTCGG CCAACTACCG CGACGCGCGC AACCACGTGG CCGCCCTGCT CGGTTCGCTC
GCGTGGGTCG CGCCGGCCGT CGACGACGCG AGCCGTGCGG TGCGCGCGCT CGCGGCCGCC
TCCGACGATC CTTCGACAGC CGATGCCGCG TACTTCGACG CGGTCGCACG GCGCGCACTG
GCAGCCGCGC TGAGCGACGG CCAGCAAAAG GTACGCGATG CGACGCGAGC AATGCTCGAG
GCGAATCTGC GGCTCGTGCT GTCGATCGCG CGCAAGTACC TGAACCGCGG CGTCGACCTG
TCCGATCTCG TGCAGGACGG CTGTCTCGGC CTGATGCGCG CGATCGAGAA ATTCGAATAC
CGGCGCGGGT TCAAGTTCTC GACTTACGCG ACCTGGTGGA TTCGCCAGGC GATCGCGCGT
GCGGTCGCGG ATCGATCGCG CACGATCCGC GTGCCGGTGC ACGTCGGTGA TCAGTACCAG
CGCGTGCAGC GGCATGCGCT GCGCTTTCGC CAGCGCACGG GTCGCCGCGC CACGCCGGCC
GAGCTCGCGG CTGAAACCGG CCTCGACGAA GGCAAGCTGC GCGCGGTGCT CGCGCTGCCC
GCCGAGCCGG TGTCGCTCGA CACGCCGCTG CCCGACGCGG ACACGGGCCT CGTGGAACTG
ATCGAGGATC AGGCATCGGC CAGCCCGTTC GAGCAACTGG CCGACACGCG CATGCGCGAA
TGCGTGCGGG CGCTGCTGCG CTCGGTCACG CCGACCGAGG CCGACGTGCT GCGCCGGCGG
TTCGGCCTCG GCGGCGCCGA GCCCGACACC TACGACGCGA TCGCGCAGGA TGCGGGGATG
TCGCGGGAAC GTGTGCGGCA GATCGAAAAA CGGGCGCTCG CCGCGCTGCG TACGGCCGCC
GAAGCCGAGA ACGCGCAGTC GTTTCTCGAC GCGTAA
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| Protein sequence | MTTPRPTPRA DTPLDPIIQL LALAGEQGYL THADLVDALP PESDSPDALD VVRAALADIG
IAVLDEPAVP APFAGAAPVE VDRDALDEGR AMLGDLARGT SASTDPLALY MRRMHAVPLL
TREGEIVLAR EIETGRHQVL HAIAGYPPAV DVLLERHRTR SATGANGSPD EEDGETPAPA
RYDALQAAVS ALRDALHAHG SRSANYRDAR NHVAALLGSL AWVAPAVDDA SRAVRALAAA
SDDPSTADAA YFDAVARRAL AAALSDGQQK VRDATRAMLE ANLRLVLSIA RKYLNRGVDL
SDLVQDGCLG LMRAIEKFEY RRGFKFSTYA TWWIRQAIAR AVADRSRTIR VPVHVGDQYQ
RVQRHALRFR QRTGRRATPA ELAAETGLDE GKLRAVLALP AEPVSLDTPL PDADTGLVEL
IEDQASASPF EQLADTRMRE CVRALLRSVT PTEADVLRRR FGLGGAEPDT YDAIAQDAGM
SRERVRQIEK RALAALRTAA EAENAQSFLD A
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