| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen_2766 |
|---|
| Symbol | |
|---|
| ID | 4092465 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia AU 1054 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008060 |
|---|
| Strand | - |
|---|
| Start bp | 3028478 |
|---|
| End bp | 3032719 |
|---|
| Gene Length | 4242 bp |
|---|
| Protein Length | 1413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638016052 |
|---|
| Product | DNA-directed RNA polymerase subunit beta' |
|---|
| Protein accession | YP_622637 |
|---|
| Protein GI | 107024310 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
|---|
| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCTC TGCTCGATCT ATTCAAGCAA GTCCAACAGG AAGAAGTTTT CGACGCGATC
AAGATCGGTC TGGCCTCGCC CGACAAGATC CGTTCGTGGT CGTTCGGCGA AGTGAAGAAG
CCGGAGACCA TCAACTACCG TACGTTCAAG CCGGAACGCG ATGGTCTGTT CTGCGCGAAG
ATCTTCGGGC CGATCAAGGA CTACGAGTGC CTGTGCGGCA AGTACAAGCG TCTGAAGCAC
CGCGGCGTGA TCTGCGAGAA GTGCGGCGTC GAAGTGACGC TGGCGAAGGT GCGTCGCGAG
CGGATGGGCC ACATCGAGCT GGCCTCGCCG GTCGCGCACA TCTGGTTCCT GAAGTCGCTG
CCGTCGCGTC TGGGCATGGT GCTCGACATG ACGCTGCGCG ACATCGAGCG CGTGCTGTAC
TTCGAAGCGT ACGTGGTGAT CGAACCGGGC ATGACGCCGC TGAAGGCGCG GCAGATCATG
ACCGAAGAGG ATTACTACAA CAAGGTCGAG GAATACGGCG ACGAATTCCG TGCCGAAATG
GGCGCGGAAG GCGTGCGTGA ACTGCTGCGC GCGATCAACA TCGACGAGCA GGTCGAGACG
CTGCGCACCG AGCTGAAGAA CACCGGCTCG GAAGCGAAGA TCAAAAAGTA CGCGAAGCGC
CTGAAGGTCC TCGAGGCATT CCAGCGTTCG GGCATCAAGC CCGAGTGGAT GATCCTCGAA
GTGCTGCCGG TGCTGCCGCC GGAACTGCGT CCGCTCGTGC CGCTGGACGG CGGCCGTTTC
GCGACGTCGG ACCTGAACGA CCTGTATCGC CGCGTGATCA ACCGTAACAA CCGGTTGAAG
CGTCTGCTCG AGCTGAAGGC GCCTGAAATC ATCGTCCGCA ACGAAAAGCG GATGCTGCAG
GAAGCCGTCG ACTCGCTGCT CGACAACGGT CGTCGCGGCA AGGCGATGAC GGGCGCGAAC
AAGCGTCCGC TGAAGTCGCT CGCCGACATG ATCAAGGGCA AGGGCGGTCG TTTCCGTCAG
AACCTGCTGG GCAAGCGCGT CGACTACTCG GGCCGTTCGG TCATCGTGGT CGGCCCGACG
CTGAAGCTGC ACCAGTGCGG TCTGCCGAAG CTGATGGCGC TCGAGCTGTT CAAGCCGTTC
ATCTTCAACA AGCTGGAAGT GATGGGCGTC GCGACGACCA TCAAGGCTGC GAAGAAGGAA
GTCGAGAACC AGACGCCGGT GGTGTGGGAC ATCCTCGAAG AGGTGATCCG CGAGCACCCG
GTGATGCTGA ACCGTGCGCC GACGCTGCAC CGTCTCGGTA TCCAGGCGTT CGAGCCGGTG
CTGATCGAAG GCAAGGCAAT CCAGCTGCAC CCGCTCGTCT GCGCGGCGTT CAACGCCGAC
TTCGACGGTG ACCAGATGGC CGTTCACGTG CCGCTGTCGC TCGAAGCGCA GATGGAAGCG
CGCACGCTGA TGCTCGCGTC GAACAACGTG CTGTTCCCGG CCAACGGCGA TCCGTCGATC
GTGCCGTCGC AGGATATCGT GCTGGGTCTG TACTACGCGA CCCGCGAAGC GGTCAACGGC
AAGGGCGAAG GCCTGTCGTT CACGGGCGTG TCGGAAGTCA TCCGCGCGTA CGAGAACAAG
GAAGTCGAGC TGGCCTCGCG CGTCAACGTG CGGATCACCG AAATGGTCCA CAACGAAGAC
AAGTCGGAAG GCGCGCCGCC GTTCGTGCCG AAGATCACGC TGTACGCGAC GACCGTCGGC
CGCGCGATCC TGTCGGAGAT CCTGCCGCAC GGCCTGCCGT TCTCGGTGCT GAACAAGCCG
CTGAAGAAGA AGGAAATCTC GCGCCTGATC AACACGGCGT TCCGCAAGTG CGGTCTGCGT
GCGACGGTGG TGTTCGCCGA CCAGCTGATG CAGTCGGGTT TCCGTCTCGC GACGCGTGCC
GGCATCTCGA TCTGCGTGGA CGACATGCTC GTGCCGCCGC AGAAGGAAAC GATCGTCGGC
GACGCCGCGA AGAAGGTGAA GGAGTACGAC CGCCAGTACA TGTCGGGTCT CGTCACCGCG
CAGGAACGCT ACAACAACGT GGTCGACATC TGGTCGGCAA CGTCGGAAGC GGTCGGCAAG
GCGATGATGG AGCAGCTGTC GACGGAGCCG GTGACGGACC GCGACGGCAA CGAGACGCGC
CAGGAGTCGT TCAACTCGAT CTACATGATG GCCGACTCGG GCGCCCGGGG TTCGGCGGTT
CAGATTCGTC AGCTGGCCGG TATGCGTGGC CTGATGGCGA AGCCGGACGG CTCGATTATC
GAGACGCCGA TTACCGCGAA CTTCCGCGAA GGTCTGAACG TGTTGCAGTA CTTCATCTCG
ACCCACGGTG CACGTAAGGG TCTGGCTGAT ACGGCACTGA AGACCGCGAA CTCGGGTTAC
CTGACGCGTC GTCTCGTCGA CGTCACGCAG GATCTGGTCG TGGTGGAAGA CGATTGCGGC
ACGTCGAACG GCGTGGCGAT GAAGGCGCTG GTCGAAGGCG GTGAAGTCGT CGAAGCGCTG
CGTGACCGTA TCCTCGGCCG CGTCGCGGTC GCGGACGTCG TGAATCCGGA AACGCAGGAA
ACGCTGTACG AATCGGGCAC GCTGCTCGAC GAAACGGCGG TCGAGGAAAT CGAACGCCTC
GGCATCGACG AAGTGCGCGT GCGCACGCCG CTGACCTGCG AAACGCGTTA CGGCCTGTGC
GCAGCCTGCT ACGGCCGCGA CCTCGGCCGC GGCTCGCTCG TGAACGTCGG CGAAGCAGTC
GGCGTGATCG CGGCGCAGTC GATCGGTGAA CCGGGCACGC AGCTGACGAT GCGTACGTTC
CACATCGGTG GTGCGGCATC GCGTGCGGCA GTGGCTTCGT CGGTCGAAGC GAAGAGCAAC
GGTATCGTCC GCTTCACGGC GACGATGCGC TACGTCACGA ACGCGAAGGG CGAGCAGATC
GTCATTTCCC GTTCGGGCGA AGCGATGATC ACCGACGACT TCGGTCGCGA GCGCGAACGT
CACAAAGTGC CGTACGGCGC GACGCTGCTG CAGCTCGACG GCGCGACCAT CAAGGCCGGC
ACGCAGCTCG CCACGTGGGA CCCGCTGACG CGTCCGATCA TCACCGAGTA CGGTGGTACG
GTGAAGTTCG AGAACGTCGA GGAAGGCGTG ACCGTCGCGA AGCAGATCGA CGACGTGACC
GGCCTGTCGA CGCTGGTCGT GATCGACGTG AAGCGCCGCG GTTCGCAGGC TTCGAAGAGC
GTGCGTCCGC AGGTGAAGCT GCTCGACGCG AACGGCGAGG AAGTGAAGAT TCCGGGCACG
GAGCACGCAG TGCAGATCGG CTTCCAGGTC GGCGCACTGA TCACCGTGAA GGATGGCCAG
CAGGTGCAGG TCGGTGAAGT GCTCGCACGT ATCCCGACGG AAGCGCAGAA GACGCGTGAC
ATTACCGGCG GTCTGCCGCG GGTGGCGGAA CTGTTCGAAG CGCGTTCGCC GAAGGATGCC
GGCATTCTCG CGGAAGTCAC CGGTACGACG TCGTTCGGCA AGGACACGAA GGGCAAGCAG
CGTCTCGTCA TCACGGACCT CGAGGGCAAC CAGCACGAGT TCCTGATCGC GAAGGAAAAG
CAGGTTCTGG TTCACGATGC CCAGGTCGTC AACAAGGGCG AAATGATCGT GGACGGTCCG
GCCGATCCGC ACGACATCCT GCGTCTGCAG GGTATCGAGG CGCTGTCGCG CTACATCGTC
GACGAAGTGC AGGACGTGTA CCGTCTGCAG GGCGTGAAGA TCAACGACAA GCACATCGAG
GTGATCGTTC GCCAGATGCT GCGTCGTGTG CAGATCACCG ACAACGGCGA TACGCGCTTC
ATCCCGGGCG AACAGGTCGA GCGTTCCGAC ATGCTGGACG AGAACGATCG CATGATCGCC
GAGGGCAAGC GTCCGGCTTC GTACGACAAC GTGCTGCTCG GTATCACGAA GGCATCGCTG
TCGACCGACT CGTTCATCTC CGCGGCATCG TTCCAGGAAA CGACCCGCGT GCTGACCGAA
GCGGCGATCA TGGGCAAGCG CGACGATCTG CGCGGCCTGA AGGAAAACGT GATCGTCGGC
CGTCTGATTC CGGCCGGTAC GGGTCTCGCG TTCCACAAGG CACGCAAGGC GAAGGAATCG
TCGGATCGCG AGCGTTTCGA CCAGATCGCA GCGGAAGAGG CATTCGACTT CGGCACGCCG
AGCGCGCCGG CAGAAGAGCC GCAACACCCG GCAGCCGAGT AA
|
|---|
| Protein sequence | MKALLDLFKQ VQQEEVFDAI KIGLASPDKI RSWSFGEVKK PETINYRTFK PERDGLFCAK
IFGPIKDYEC LCGKYKRLKH RGVICEKCGV EVTLAKVRRE RMGHIELASP VAHIWFLKSL
PSRLGMVLDM TLRDIERVLY FEAYVVIEPG MTPLKARQIM TEEDYYNKVE EYGDEFRAEM
GAEGVRELLR AINIDEQVET LRTELKNTGS EAKIKKYAKR LKVLEAFQRS GIKPEWMILE
VLPVLPPELR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLELKAPEI IVRNEKRMLQ
EAVDSLLDNG RRGKAMTGAN KRPLKSLADM IKGKGGRFRQ NLLGKRVDYS GRSVIVVGPT
LKLHQCGLPK LMALELFKPF IFNKLEVMGV ATTIKAAKKE VENQTPVVWD ILEEVIREHP
VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAFNAD FDGDQMAVHV PLSLEAQMEA
RTLMLASNNV LFPANGDPSI VPSQDIVLGL YYATREAVNG KGEGLSFTGV SEVIRAYENK
EVELASRVNV RITEMVHNED KSEGAPPFVP KITLYATTVG RAILSEILPH GLPFSVLNKP
LKKKEISRLI NTAFRKCGLR ATVVFADQLM QSGFRLATRA GISICVDDML VPPQKETIVG
DAAKKVKEYD RQYMSGLVTA QERYNNVVDI WSATSEAVGK AMMEQLSTEP VTDRDGNETR
QESFNSIYMM ADSGARGSAV QIRQLAGMRG LMAKPDGSII ETPITANFRE GLNVLQYFIS
THGARKGLAD TALKTANSGY LTRRLVDVTQ DLVVVEDDCG TSNGVAMKAL VEGGEVVEAL
RDRILGRVAV ADVVNPETQE TLYESGTLLD ETAVEEIERL GIDEVRVRTP LTCETRYGLC
AACYGRDLGR GSLVNVGEAV GVIAAQSIGE PGTQLTMRTF HIGGAASRAA VASSVEAKSN
GIVRFTATMR YVTNAKGEQI VISRSGEAMI TDDFGRERER HKVPYGATLL QLDGATIKAG
TQLATWDPLT RPIITEYGGT VKFENVEEGV TVAKQIDDVT GLSTLVVIDV KRRGSQASKS
VRPQVKLLDA NGEEVKIPGT EHAVQIGFQV GALITVKDGQ QVQVGEVLAR IPTEAQKTRD
ITGGLPRVAE LFEARSPKDA GILAEVTGTT SFGKDTKGKQ RLVITDLEGN QHEFLIAKEK
QVLVHDAQVV NKGEMIVDGP ADPHDILRLQ GIEALSRYIV DEVQDVYRLQ GVKINDKHIE
VIVRQMLRRV QITDNGDTRF IPGEQVERSD MLDENDRMIA EGKRPASYDN VLLGITKASL
STDSFISAAS FQETTRVLTE AAIMGKRDDL RGLKENVIVG RLIPAGTGLA FHKARKAKES
SDRERFDQIA AEEAFDFGTP SAPAEEPQHP AAE
|
|---|
| |