| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen_0209 |
|---|
| Symbol | |
|---|
| ID | 4090775 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia AU 1054 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008060 |
|---|
| Strand | - |
|---|
| Start bp | 222294 |
|---|
| End bp | 223361 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638013469 |
|---|
| Product | dihydrouridine synthase TIM-barrel protein nifR3 |
|---|
| Protein accession | YP_620096 |
|---|
| Protein GI | 107021769 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGTTA TCGGCCCTCA CGTATTGCGT AACAACCTGT TCGTCGCCCC GATGGCCGGG
GTGACGGATC GTCCGTTCCG CCAGCTGTGC AAGCGGCTGG GGGCCGGTTA CGCCGTGTCC
GAGATGGTCG CGTCCAACGC GCAGCTGTGG AAGAGCGCGA AGACGATGCG GCGCGCGAAC
CACGAAGGCG AAGTCGAGCC GATCGCGGTG CAGATCGCCG GCGCCGATCC GGCGATGATG
GCCGAAGCGG CCCGCTACAA CGTCGACAAC GGCGCGCAGA TCATCGACAT CAACATGGGC
TGCCCGGCGA AGAAGGTCTG CAACGTCGCG GCCGGCTCCG CGCTGCTGCA GAACGAGCCG
CTCGTGCAGC GGATCGTCGA GGCGGTCGTC GCGGCGGTCG GCACGGGGCC CGATGCGGTG
CCCGTCACGC TGAAGATCCG CACCGGCTGG GACCGCGAGC ACAAGAACGC GATCACGGTC
GCGCGCCTGG CCGAAGCGGC CGGCATCTCG ATGCTCACCG TGCATGGCCG CACACGCGCC
GACCTGTACC GCGGCGACGC CGAGTACGAC ACCATCGCGG CCGTGAAGGC GGCCGTGCGG
ATTCCGGTGG TCGCGAACGG CGACATCACG TCGCCCGCCA AGGCGAAGGC CGTGCTCGAT
GCAACCGGCG CCGACGCGCT GATGATCGGT CGTGCCGCGC AAGGCCGGCC GTGGTTGTTC
CGCGAAATCG ATCATTTCCT GCAAACCGGC GAGCTGCTGC CCCCGCCGCG GATCGACGAG
ATCCAGCACG TGATGAACGA ACACCTGGAA GACCACTACG CTTTCTATGG CGAATTCACC
GGTGTGCGTA CTGCGCGCAA GCACATCGGC TGGTACACTC GCGGCCTTTC CGGTGCCAAC
GGGTTCCGGC ACCGAATGAA CACGCTCGAT TCCACCCGCG AGCAGCTCGC CGCCGTCAAT
GCTTTCTTCG AGGCGCAAAA GGCGCTCTCG GACCACCTCG TCTACGTCGA TGACGAAGCG
GAGAACAGCC AGGGCGAGTC GGACGACCAT AACCAGTTAG CAGCATGA
|
|---|
| Protein sequence | MPVIGPHVLR NNLFVAPMAG VTDRPFRQLC KRLGAGYAVS EMVASNAQLW KSAKTMRRAN
HEGEVEPIAV QIAGADPAMM AEAARYNVDN GAQIIDINMG CPAKKVCNVA AGSALLQNEP
LVQRIVEAVV AAVGTGPDAV PVTLKIRTGW DREHKNAITV ARLAEAAGIS MLTVHGRTRA
DLYRGDAEYD TIAAVKAAVR IPVVANGDIT SPAKAKAVLD ATGADALMIG RAAQGRPWLF
REIDHFLQTG ELLPPPRIDE IQHVMNEHLE DHYAFYGEFT GVRTARKHIG WYTRGLSGAN
GFRHRMNTLD STREQLAAVN AFFEAQKALS DHLVYVDDEA ENSQGESDDH NQLAA
|
|---|
| |