| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_5964 |
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| Symbol | |
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| ID | 4454692 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia HI2424 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008544 |
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| Strand | + |
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| Start bp | 96620 |
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| End bp | 99817 |
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| Gene Length | 3198 bp |
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| Protein Length | 1065 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639698025 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_839590 |
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| Protein GI | 116686343 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.054891 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGAGT TCTTCATCAA GCGTCCCATT CTCGCGTGGG TCATGGCCAT CGTCATCATG
CTGGTGGGCG CGGCGGCGGT CACGAGTCTT CCCGTCGCGC AGTACCCCAC CATCGCGCCG
CCCTCGGTGC AGGTGACGGC CACTTACCCC GGCGCCTCCG CCGACACCGT CGCTGCAACC
GTGACCCAGG TGATCGAGCA GAAGCTGAGC GGCATCGACA ACGTGCTGTA CATGTCGTCC
ACGAGCAGTT CCGCCGGGCA GGCCACCATC ACGCTGACGT TCAATCCCGG CACGAATCCC
GACATCGCGC AGGTACAGGT GCAGAACAAG GTGACGCAGG CCACGCCTAC CCTGCCCCAA
ACGGTGCAGG AGCAAGGTGT GCAGGTCGCG AAGGCGTCGA CGAGCTTCCT CATGATCGTC
GCGCTCTCGT CGCCGGGCGG CACCTGGAAT TCGGTGGATC TCGGCAACAT CATCGCGACC
CGGATCGAAG ATCCGCTCGC GCAGTTGAAC GGCGTGGGCG ACGTGACGCT GTTCGGCGCA
CAGCATGCGA TGCGCATCTG GCTCAACCCG GTGAAGCTGC ACAGCTTCGG ACTCACGCCC
TCCGACGTGA CCACGGCCAT CACGAACCAG AACGTCGAGC TTTCCACGGG GCAGGTCGGC
GGCTCGCCGG CAACGGATTC GCAGGCCATC AACGCGACCA TCCGCTCGTC GAGTCTGCTG
ACGACCGCCG ACCAGTTCGC CGGCATCCTG CTGCGCGTGA ACAGCGACGG CTCGCGCGTG
CTGCTGAAGG ACGTGGCGCG CGTGGAGGTG GGCGGCGACA GCTACGACAC CTCGTCGCGC
CTGAACGGCA AGCCGGCATC CGCGCTCGCC ATCAAGCTCG CCACCGGCGC CAACGCGCTG
GACGCAGCCA ACGCCGTGCG CGCGAAGCTC GCCGAGATCC AGCTGCAATT GCCGAAGGAC
GTCGCGATCA GTTATCCGTA CGACACCACG CCGTTCGTTC GCATCTCGAT CGAAGAGGTC
GTGAAGACGC TGTTCGAAGC GGTCGTACTG GTCTTCCTCG TGATGTACCT GTTCCTGCAG
AACGTGCGCG CCACGCTGAT TCCGACCATC GTGGTGCCCG TTGCGCTGCT CGGCACGTTC
GGTGTGATGT CGATGATCGG TTTTTCGATC AACGTCCTCT CGATGTTCGC GATGGTGCTC
GCCATCGGCC TGCTCGTGGA CGACGCCATC GTGGTGGTGG AAAACGTCGA GCGCATCATG
AGCGAGGAGA AGCTCGGCCC GAAGGAAGCC ACGCACAAGG CGATGGGGCA GATTACCGGC
GCCCTGGTCG GCGTGACCAC CGTGCTCACC GCCGTCTTCA TTCCGATGGC GTTCTTCGCG
GGCTCCACGG GCGCGATCTA CCGGCAGTTC TCCATCACCA TCGTCTCGGC GATGCTGCTG
TCGGTCATGC TCGCGCTTAC GCTCACGCCG GCACTGTGCG CCACGCTGCT CAAGCGCGCC
GACGTGGAGC ACCACGAAAA GCGCGGCTTC TTCGGCTGGT TCAACCGGTG GTTCGCCAAG
AGCAATGCGG GCTACAGTTC CTCGCTCGCA CGCGTGGTCG CGCGGCCCGC GCGTTACATG
CTTCTCTACG GCGCGATCGC CGGCGTCGTG GCGCTGCTCT ACGTCACGTT GCCCTCCTCG
TTCCTGCCTG ACGAAGACCA GGGCTACTTC ATCGTGTCGA TCAGCGCGCC CGCGGGCACG
CCGGCCTCGC GTACGCTGAA GACGGTGGAG GCCGTGGAGC AGTACGTGCT GAAAGACGAG
CCGGGCGTCA AGCAGGTCAT CGCCATCAAC GGCTTCAGCT TCAACGGCCA GGGGCAGAAC
AACGCCATCG CGTTCGTGAC GCTCAAGGAC TGGAGCCTGC GCGGTTCGCG CGACAGCGCG
TCGGCCATCA TCGCGCGCGC CAGCCAGCAT TTCGCCGGCA ATCGCGACGC GCGCATCTTC
GTGCTGAATC CGCCCGCCAT TCAGGAACTG GGTACGCAAA GCGGCCTCGA CTTCGAGATA
GAAGACCGCG GCGGCGCAGG CCACGACAAG CTGCTCGCGG TGCGCAACCA GTTTCTCGGC
ATGGCGTCGA AGGAACCGAC GCTCGCGATG GTGCGCCCGT CCGGCCTTGA AGACACGCCG
CAGCTGCAGG TGGACATCGA CCGCGAAAAA GCCAACGCGC TGGGGCTTTC CATCTCCGAC
GTCAACGACA CGCTGCAGAC CGCGTTCGGT TCGTCCTACG TGAACAACTA CATCGACACG
GGGCGCGTGC AGAAAGTCTA TGTGCAGTCG GACGCGCCGT ATCGCATGAT GCCTGCCGAC
CTCGGCGACT GGTATGTGAA GGCAGGCAGC AGTTCGTCGG GTTCGTCGTC CTCGTCGTCC
TCGAGCACCA CCACGAGCAC GACAGGCTAC GACGCCACGA TGGTGCCCTT CTCGTCGTTC
GCAAAGAGCC ACTGGACGTT CGGGCCGCCA CAGATCGAGC GCTACAACCG GCAGCTCGCC
GCGGGCATGT CGGCCGCCAC GCGGCCCGGC GTGAGCACCG GCGAGGCGAT GACGGCAGTC
GAACAGCTTG CGCGCAAACT ACCGCCTGGC TTCGCCGTGG AATGGACGGG CCAGTCGTAT
CAGGAGAAGC AGGCCGGCTC GCAAGCCACG GTGCTCTATG CGATCTCGCT CGTCGTCGTG
TTCCTGTGCC TTGCGGGCCT CTACGAAAGC TGGTCGATTC CGCTTGCGGT GCTGCTCGTC
GTGCCGCTCG GTGTGCTGGG CGCGTTACTG GCCGCTCACG GGCGCGGGCT TTCGAACGAC
ATCTATTTCA AGGTGGGGTT GCTGGCCACT ATCGGTCTGT CCACGAAGAA CGCCATCCTG
ATCGTCGAGT TCGCGAAGGA TCTGCAGGCG CAGGGGCACA GCCTCGTGGA CGCCGTACTC
GAAGCCGCCC ACATGCGGCT GCGCCCCATT CTCATGACTT CGCTCGCGTT CGTGTTCGGC
GTGCTGCCGC TCGTCATCAG TACGGGGGCC GGCGCCGGCG CACGCCACGC GATCGGCACG
GGCGTGACGG GCGGCATGAT CGCGGCCACG GTGCTCGCCA TCTTCTTCGT ACCGGTCTTC
TTCGTCGTGG TGCGCAGACT GTTCAACGAA CACGGTCACA CCACGGACTC CGCCGACATC
AACGAGGGCA ACGCATGA
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| Protein sequence | MAEFFIKRPI LAWVMAIVIM LVGAAAVTSL PVAQYPTIAP PSVQVTATYP GASADTVAAT
VTQVIEQKLS GIDNVLYMSS TSSSAGQATI TLTFNPGTNP DIAQVQVQNK VTQATPTLPQ
TVQEQGVQVA KASTSFLMIV ALSSPGGTWN SVDLGNIIAT RIEDPLAQLN GVGDVTLFGA
QHAMRIWLNP VKLHSFGLTP SDVTTAITNQ NVELSTGQVG GSPATDSQAI NATIRSSSLL
TTADQFAGIL LRVNSDGSRV LLKDVARVEV GGDSYDTSSR LNGKPASALA IKLATGANAL
DAANAVRAKL AEIQLQLPKD VAISYPYDTT PFVRISIEEV VKTLFEAVVL VFLVMYLFLQ
NVRATLIPTI VVPVALLGTF GVMSMIGFSI NVLSMFAMVL AIGLLVDDAI VVVENVERIM
SEEKLGPKEA THKAMGQITG ALVGVTTVLT AVFIPMAFFA GSTGAIYRQF SITIVSAMLL
SVMLALTLTP ALCATLLKRA DVEHHEKRGF FGWFNRWFAK SNAGYSSSLA RVVARPARYM
LLYGAIAGVV ALLYVTLPSS FLPDEDQGYF IVSISAPAGT PASRTLKTVE AVEQYVLKDE
PGVKQVIAIN GFSFNGQGQN NAIAFVTLKD WSLRGSRDSA SAIIARASQH FAGNRDARIF
VLNPPAIQEL GTQSGLDFEI EDRGGAGHDK LLAVRNQFLG MASKEPTLAM VRPSGLEDTP
QLQVDIDREK ANALGLSISD VNDTLQTAFG SSYVNNYIDT GRVQKVYVQS DAPYRMMPAD
LGDWYVKAGS SSSGSSSSSS SSTTTSTTGY DATMVPFSSF AKSHWTFGPP QIERYNRQLA
AGMSAATRPG VSTGEAMTAV EQLARKLPPG FAVEWTGQSY QEKQAGSQAT VLYAISLVVV
FLCLAGLYES WSIPLAVLLV VPLGVLGALL AAHGRGLSND IYFKVGLLAT IGLSTKNAIL
IVEFAKDLQA QGHSLVDAVL EAAHMRLRPI LMTSLAFVFG VLPLVISTGA GAGARHAIGT
GVTGGMIAAT VLAIFFVPVF FVVVRRLFNE HGHTTDSADI NEGNA
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