| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_4592 |
|---|
| Symbol | |
|---|
| ID | 4451331 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | + |
|---|
| Start bp | 1565759 |
|---|
| End bp | 1566829 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639696648 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_838219 |
|---|
| Protein GI | 116692686 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00157663 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGACTC CCGCCTCCTC CCTCGAAGCA CTGCGCACGC TGCCCGCGCG GCGCCCGGCC
GTACGCTGGG TGCTGCGCGT GCTGCGCTGG GCGGTCACGC TCGCCGTCAC GTTCGCGGGG
CTGCTCGCGC TGACGTTCGT GATCGGCCGC AAGGTGCCGA TCGATCCCGT GCTCGCGATC
CTCGGCGATC GCGCGTCGGC CGAAGCGTAT GCGGCCGAGC GTATCGCACT CGGCCTCGAC
AAGCCGCTCG TCACGCAATT CCTGATCTAT GCGCGCGACG TACTGCACGG CAATCTCGGC
ATGTCGCTGC TGACCGCGAA CCCGGTGCTC GACGACATCA AGCGCGTGTT TCCGGCCACG
CTCGAACTCG CGACGATCGC GACGCTGATC GGGATCGCGA TCGGCGTGCC GCTCGGCGTC
GCGGCCGCGG TCAAGCACAA CCGGCCGATC GATCACATCG CGCGCTTCGT CGGCCTGATC
GGCAATTCGG TGCCGGTGTT CTGGCTCGGG CTGATGGGGC TGCTGCTGTT CTACGCACGG
CTGCACTGGG TCGGCGGCCC CGGTCGGCTC GATCCCGTGT ACGACGGGAT GGTCGATCCG
CGCACCGGCA GCCTGCTGAT CGACGCGGCG CTCGCGGGCG AGTGGGACGT GTTCCGCAAC
GCGGTGTCGC ATATCGCGCT GCCGGCCGCG ATCCTCGGCT ACTACTCGGT CGCGTACCTG
AGCCGGATGA CCCGCTCGTT CATGCTCGAC CAGTTGAGCC AGGAATACAT CGTCACCGCG
CGCGCGAAGG GCCTGTCGGA GCGGCGCGTG ATCTGGCGGC ATGCGTTCGG CAACATCGCG
GTGCCGCTGC TCACCGTGAT CGCGCTCACG TACAGCAACC TGCTCGAAGG CTCGGTGCTG
ACCGAGATCG TGTTCGCGTG GCCCGGGCTC GGCTCATACC TGACCGGCGC GCTGCTGAAC
GCCGACATGA GCGCGGTGCT CGGCGCGACG CTCGTGATCG GCGCGATGTT CATCACCGTC
AACCTGCTGA CCGACGCGCT GTACCGCGTG TTCGATCCGC GTGCACGCTG A
|
|---|
| Protein sequence | MSTPASSLEA LRTLPARRPA VRWVLRVLRW AVTLAVTFAG LLALTFVIGR KVPIDPVLAI
LGDRASAEAY AAERIALGLD KPLVTQFLIY ARDVLHGNLG MSLLTANPVL DDIKRVFPAT
LELATIATLI GIAIGVPLGV AAAVKHNRPI DHIARFVGLI GNSVPVFWLG LMGLLLFYAR
LHWVGGPGRL DPVYDGMVDP RTGSLLIDAA LAGEWDVFRN AVSHIALPAA ILGYYSVAYL
SRMTRSFMLD QLSQEYIVTA RAKGLSERRV IWRHAFGNIA VPLLTVIALT YSNLLEGSVL
TEIVFAWPGL GSYLTGALLN ADMSAVLGAT LVIGAMFITV NLLTDALYRV FDPRAR
|
|---|
| |