| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_4340 |
|---|
| Symbol | |
|---|
| ID | 4452699 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | + |
|---|
| Start bp | 1284712 |
|---|
| End bp | 1285368 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639696396 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_837967 |
|---|
| Protein GI | 116692434 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.255633 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTTCC AGAACGCGAT CGATTTCCTG CCGATCCTGC TGAAGGGCGC GGTGGTCACG
ATCGAGATCA CCGCATGCGC GTTCGTGCTC AGCTCGGTGC TCGGGCTGAT CCTCGCGCTG
CTGAAGGTGT CGCGCAATCG TGCCGTCGCG ACGGCCGGCA GCACGATCAT CAACGTGATC
CGCGGGCTGC CGATCATCGT GCAGCTGTTC TACATGTATT TCGTGCTGCC CGATCTCGGC
GTGCAACTGT CGGCGTTCCA GGCCGGCGTG CTCGGTCTCG GCATCGCGTA TTCGGCGTAT
CAGGCCGAGA ACTTCCGCGC CGGCATCGAG GCGATCGACC GCGGCCAGAT CGAAGCCGCG
CACGCGATCG GCATGCGCGG CCCGATGATC ATGCGGCGCG TGGTGCTGCC GCAGGCGTTC
CGCATCGCGC TGCCGCCGTA CGGCAACACG CTGGTGATGC TGCTGAAGGA TTCGTCGGTC
GCGTCGACCA TCACGGTCGC GGAAATCACG CGCGCCGGCC AGCTGATCGC ATCGTCGACG
TTCCAGAACA TGAGTGTCTA CACGCTCGTC GCGCTGCTGT ATCTCGCGCT CGGCCTGCCG
CTGATGTTCG CGGTGAACCG GCTCGGCAAG CGGCTCGCAG TGAGGAGGGG CGCATGA
|
|---|
| Protein sequence | MFFQNAIDFL PILLKGAVVT IEITACAFVL SSVLGLILAL LKVSRNRAVA TAGSTIINVI
RGLPIIVQLF YMYFVLPDLG VQLSAFQAGV LGLGIAYSAY QAENFRAGIE AIDRGQIEAA
HAIGMRGPMI MRRVVLPQAF RIALPPYGNT LVMLLKDSSV ASTITVAEIT RAGQLIASST
FQNMSVYTLV ALLYLALGLP LMFAVNRLGK RLAVRRGA
|
|---|
| |