| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_3886 |
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| Symbol | |
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| ID | 4451945 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia HI2424 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008543 |
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| Strand | + |
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| Start bp | 750824 |
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| End bp | 753241 |
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| Gene Length | 2418 bp |
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| Protein Length | 805 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639695944 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_837516 |
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| Protein GI | 116691983 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.673998 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.56553 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAGA CGACAGGCGG AAAGAAAGCA ACAGGCAAGG GCTCGACGGA GCCGACCAAG
AAGGTCACAG CGGCCAAGTC TGCTTCTTCC ACCAGGACAA CGTCTTCAGC CACGTCAGCC
CCTGCAGGAA AGAAAACCGC GGCCGGCACT GCTCAGGCTG CGCCGGCGCC GGCAGCCAGA
ACACGGGCTG CCGCCAGACC CGACTCCGGG CCGGCCAAGC CGGCGGCGAA GCGGGCAAGT
GCGAAAAGCG CAAGGGACAC GACTGCCGAC GCGGACGAAA CGGCAGTACG TACTACTCAT
GCACCCACGG TTCAACCGGC TGTCGTCCAG CAGCCGCGAG TCGATATAGC CGGTACGGCG
AACTCCATGA CCAAAAAGCT GAACGAAGTA TCCGTCGAAG ACGACGCAAA TCAGAGCGAC
GAGCAGCCCG CAGCCGCGGC TGCACCGGGC AAGTCCAAGG TGCGCGATCG TCGCGCCAAG
GAAAAGGCGC TGCTGAAGGA AGCGTTCGCG ACGAGCACGC CGGGCACGGC CGAGGAGCTC
GAAGAGCGCC GCGTGAAACT GCGCGCGCTG ATCAAGCTCG GCAAGGAGCG CGGCTTCCTC
ACGTACGCCG AAATCAACGA CCACCTGCCG GACAACTTCA CCGAGACGGA AGCCCTCGAG
GGCATCATCG GCACGTTCAA CGACATGGGC GTGGCGGTTT ACGAGCAGGC GCCGGACGCG
GAAACGCTGC TCCTGAACGA CAACGCGCCC GCCGCGTCGT CGGACGATGA AGTCGAGGAG
GAAGCGGAAG TCGCGCTGTC CACCGTCGAT TCGGAATTCG GCCGCACGAC CGATCCGGTC
CGGATGTACA TGCGCGAGAT GGGCACGGTC GAGCTGCTCA CGCGCGAAGG CGAAATCGAG
ATCGCGAAGC GGATCGAGGA CGGCCTGCGC CACATGGTGA TGGCCATCTC CGCGTGCCCG
ACGACGATCG CCGACATCCT CGCGATGGCC GAACGCGTCG CGAACGAAGA GATCCGCGTC
GACGAGCTCG TCGACGGCCT GCTCGATCCG AATGCTTCGG ACTCCGCCGA TACGGACGGC
TTCTCCGCGA AGGAAGCGGA AGCCATCGAG AACGAGGACG AGGAAGCCGA AGAGGAAGAG
GAAGAAGAGG AAGAGGAGGA AGACGACGGT GCCGCGCAGG CATCGGCGAA CGCCGCCCAG
CTCGAAGCCC TCAAGCGCGC ATCGCTCGAG AAGTTCTCGC AGATCAGCGA GTGGTTCGAC
AAGATGCGCC GCGCGTTCGA GAAGGAAGGC TACAAGTCGA AGGCCTACCT GAAGGCGCAG
GAAACGATCC AGAGCGAACT GATGACGATC CGCTTCACCG CGCGTACCGT CGAACGCCTG
TGCGACACGC TGCGCGCGCA GGTGGACGAA GTGCGTCAGG TCGAGCGTCA GATCCTGCAC
ATCGTCGTCG ACAAGTGCGG CATGCCGCGC TCGGAATTCA TCGCGCGCTT CCCGGGCAGC
GAGACGGATC TCGACTGGGC CGAGAAGATC ACCGCGGAAG GCCATCCGTA CAGCGCGGTG
CTGTCGCGTA ACGTCCCGGC GATCCGCGAA CAGCAGCAGC GCCTGCTCGA CCTGCAGGCG
CGCGTCGTGC TGCCGCTGAA GGACCTGAAG GAAACCAACC GCCAGATGGC GGCCGGCGAA
CTGAAGGCGC GTCAGGCGAA GCGCGAAATG ACCGAGGCCA ACCTGCGTCT CGTGATCTCG
ATCGCGAAGA AGTACACGAA CCGCGGCCTG CAGTTCCTCG ACCTGATCCA GGAAGGCAAC
ATCGGCCTGA TGAAGGCGGT GGACAAGTTC GAATACCGTC GCGGCTACAA GTTCTCGACC
TATGCGACGT GGTGGATCCG TCAGGCCATC ACGCGTTCGA TCGCCGACCA GGCGCGCACG
ATCCGTATTC CGGTTCACAT GATCGAAACG ATCAACAAGA TGAACCGCAT CTCGCGGCAG
ATCCTGCAGG AAACCGGTCT CGAGCCGGAC CCGGCAACGC TCGCCGAGAA GATGGAGATG
CCGGAAGACA AGATCCGCAA GATCATGAAG ATCGCGAAGG AGCCGATCTC GATGGAAACG
CCGATCGGTG ACGACGACGA TTCCCATCTC GGCGACTTCA TCGAGGACAC CAACACGGTC
GCGCCGGCGG ATGCCGCGCT GCATGCCAGC ATGCGCGACG TCGTGAAGGA CGTGCTCGAT
TCGCTGACGC CGCGCGAGGC GAAGGTGCTG CGGATGCGTT TCGGTATCGA GATGAGCACC
GATCACACGC TCGAGGAAGT CGGCAAGCAG TTCGACGTCA CGCGCGAGCG GATCCGTCAG
ATCGAGGCCA AGGCGCTGCG CAAGCTGCGT CACCCGAGCC GTTCCGACAA GCTGAAGTCG
TTCCTCGAAG GGAACTGA
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| Protein sequence | MAKTTGGKKA TGKGSTEPTK KVTAAKSASS TRTTSSATSA PAGKKTAAGT AQAAPAPAAR
TRAAARPDSG PAKPAAKRAS AKSARDTTAD ADETAVRTTH APTVQPAVVQ QPRVDIAGTA
NSMTKKLNEV SVEDDANQSD EQPAAAAAPG KSKVRDRRAK EKALLKEAFA TSTPGTAEEL
EERRVKLRAL IKLGKERGFL TYAEINDHLP DNFTETEALE GIIGTFNDMG VAVYEQAPDA
ETLLLNDNAP AASSDDEVEE EAEVALSTVD SEFGRTTDPV RMYMREMGTV ELLTREGEIE
IAKRIEDGLR HMVMAISACP TTIADILAMA ERVANEEIRV DELVDGLLDP NASDSADTDG
FSAKEAEAIE NEDEEAEEEE EEEEEEEDDG AAQASANAAQ LEALKRASLE KFSQISEWFD
KMRRAFEKEG YKSKAYLKAQ ETIQSELMTI RFTARTVERL CDTLRAQVDE VRQVERQILH
IVVDKCGMPR SEFIARFPGS ETDLDWAEKI TAEGHPYSAV LSRNVPAIRE QQQRLLDLQA
RVVLPLKDLK ETNRQMAAGE LKARQAKREM TEANLRLVIS IAKKYTNRGL QFLDLIQEGN
IGLMKAVDKF EYRRGYKFST YATWWIRQAI TRSIADQART IRIPVHMIET INKMNRISRQ
ILQETGLEPD PATLAEKMEM PEDKIRKIMK IAKEPISMET PIGDDDDSHL GDFIEDTNTV
APADAALHAS MRDVVKDVLD SLTPREAKVL RMRFGIEMST DHTLEEVGKQ FDVTRERIRQ
IEAKALRKLR HPSRSDKLKS FLEGN
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