| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_3242 |
|---|
| Symbol | |
|---|
| ID | 4453653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | - |
|---|
| Start bp | 78662 |
|---|
| End bp | 80011 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639695307 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_836880 |
|---|
| Protein GI | 116691347 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00895] benzoate transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.531271 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAAATAC GGAAAATCAA CGTCTACGAC ATCATCGACA GTCGCAGAAT CGGCAGGAGG
CAGTATTTCA TCGTCGCCTT CTGCGCGCTG CTGATGCTTT TCGACGGCTT CGACACCCAG
GTCATCAGCT TCATCGTGCC CGTTCTCGCG AAAGAATGGC AACTGCCCAA GGCGGTATTC
GGCGCGATTT TTTCAGCGGT GTTCTTCGGG TTGCTGATCG GCAATTTCGG CATTCCGTTC
GCGACCCGAC GCTTCAGCAC GAAGAAGATC GCTTTCGTGG CAACCGCTGC TTTCGGCCTG
TTCACCGTCC TGACCGTCTT TGCCACCAGC GTGCCGCAGC TGATCGCCTT GAGGTTCCTC
ACCGGCATCG GGCTCGGAGC GGCCACGCCT TGCGCGGTGG GCCTCGTTTC GGAATTCAGC
CCGAAGAGAA CCCGCGCGAC TTTCGTCATT CTCGTCTACA TGGGATATGC GCTGGGGTTC
ATCTTCGCGG GCATCTGCAG CAGCGCGTTG ATCCCGCGGT TCGGCTGGGA AGGCCCACTG
TGGCTGGGCG GGCTCGCGGC AGTCGGCTTG ACGGTGTTGC TCGTCCCGCT GCTGCCGGAA
TCCGTGGCCT ACCTGTCGGC GAACGCGCAG CCCGGTGAAT TGCTTCGTGC AACCAAGCGC
CTCTTTCCCG ATTTCACGCT GCAAGCGGAC AGCGAACTGG TCACTCACGA AGAGAAGCCG
GCAGACGCAA GTGTGCTCGG GTTGTTCTCC GCACAATTCC GCGTGGGGAC ATTCCTGCTG
TGGGCCGTAT TCGCCATCAA CCTGGCCGCG TTCTATTTTC TGCAGAGCTG GCTGCCGACC
GTTCTCGCGT CCATCTCGTT CCCACCCGCG CTCGTGGTCT GGGCGACCAT CACCGTGATC
ATCGGCGGCA TGGTGGCCAG TCTGCTGATG GGACCCATCA TGGATCGCAC GAGCCCTTAC
AGAATTCTGT CCGCGGTCTA CGTCGGCGGC GCCGTGTCGA TGTACGCAAT CTCCATCGCG
ATCGGCTCAT CGCATCTCGC TTTACTCACG ACGATCTTCT TTTGCGGCTT TTGCATCAGC
GGCGGACAAA CCTGCGCGAT CGCGTTGTGC ACGCTGTTCT ATAGCCCGGA ATTGCGCGCC
CCGGGCGTCG CGTGGGCCTA CGGATTCGGT CGGCTCGGCG CCGCGGGCGG CACTTACCTC
GCGGGCGTCC TGTACGCGAA CAACTGGAGC GTCGACGCGA TGTTTCGCGT GGCAGCCGCG
CCAATCCTCA TTGCAGCGGC TTGCGTGGCG CTGATGGGCG CTTGCTATGG CCTGACGAAG
AACGGCCTGA AGAAATCCTT TTCGGCCTGA
|
|---|
| Protein sequence | MEIRKINVYD IIDSRRIGRR QYFIVAFCAL LMLFDGFDTQ VISFIVPVLA KEWQLPKAVF
GAIFSAVFFG LLIGNFGIPF ATRRFSTKKI AFVATAAFGL FTVLTVFATS VPQLIALRFL
TGIGLGAATP CAVGLVSEFS PKRTRATFVI LVYMGYALGF IFAGICSSAL IPRFGWEGPL
WLGGLAAVGL TVLLVPLLPE SVAYLSANAQ PGELLRATKR LFPDFTLQAD SELVTHEEKP
ADASVLGLFS AQFRVGTFLL WAVFAINLAA FYFLQSWLPT VLASISFPPA LVVWATITVI
IGGMVASLLM GPIMDRTSPY RILSAVYVGG AVSMYAISIA IGSSHLALLT TIFFCGFCIS
GGQTCAIALC TLFYSPELRA PGVAWAYGFG RLGAAGGTYL AGVLYANNWS VDAMFRVAAA
PILIAAACVA LMGACYGLTK NGLKKSFSA
|
|---|
| |