| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_3633 |
|---|
| Symbol | |
|---|
| ID | 7860975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | + |
|---|
| Start bp | 4045805 |
|---|
| End bp | 4046530 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643867736 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_002883637 |
|---|
| Protein GI | 229822111 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0842] ABC-type multidrug transport system, permease component |
|---|
| TIGRFAM ID | [TIGR00025] ABC transporter efflux protein, DrrB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.189957 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCGA CATCTACCAG GGTGCTGCGT CAGCTGCGGC ACGACCCCCG CACGATCGGC
ATGGTGCTCG TCGTCCCGTG CCTGCTCATG ACGCTGCTCT GGTGGATGTT CCAGGACTCC
CCCGGCGGTG AGCAGATCTT CACGGCGGCC GCCCCGGCGC TGCTCGCGAT GTTCCCGCTG
CTCATCATGT TCCTCATCAC CTCGGTCGCG ACGCTCCGGG AGCGGACGAC CGGCACGCTC
GAGCGCCTCC TCACGCTCCC CCTCTCGCGG GGCGGCCTCA TCGGCGGGTA CGCGCTGGCG
TTCGGGCTCG TCGCGGTGGT GCAGGCGGCA GCCGTGTCGG CGCTGCTCAT CGGCGCCCTC
GACTTCGACC CGGCCGGGCC GTTCTTCCTG CTTCTCGGCG TGGCGGCCCT CGACGCTGTG
CTGGGGGTCG CGCTCGGCCT GTTCGTCAGC GCGTTCGCGC GCACCGAGTT CCAGGCCGTG
CAGTTCATGC CGGCGATCCT CGTGCCGCAG CTGCTGCTGT GCGGGCTCTT CGTGCCGCGC
GGCGACCTGC CCCCCGTCCT CGAGGTCATC TCGAACGCGC TCCCGCTGTC CTACGCCGTC
GACGCGATCA CCGAGGTGTC CACGCAGGCG GAGCCGGACA TCCTGGCGCA GGTCGGGATC
CTCGCGGCGT TCACCGTCGG GGTGCTCGTG CTCGGGTCGC TCACGCTCCG GCGGCGCTCC
GACTGA
|
|---|
| Protein sequence | MIATSTRVLR QLRHDPRTIG MVLVVPCLLM TLLWWMFQDS PGGEQIFTAA APALLAMFPL
LIMFLITSVA TLRERTTGTL ERLLTLPLSR GGLIGGYALA FGLVAVVQAA AVSALLIGAL
DFDPAGPFFL LLGVAALDAV LGVALGLFVS AFARTEFQAV QFMPAILVPQ LLLCGLFVPR
GDLPPVLEVI SNALPLSYAV DAITEVSTQA EPDILAQVGI LAAFTVGVLV LGSLTLRRRS
D
|
|---|
| |