| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_3367 |
|---|
| Symbol | |
|---|
| ID | 7860333 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | + |
|---|
| Start bp | 3748246 |
|---|
| End bp | 3749142 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 643867466 |
|---|
| Product | Xylose isomerase domain protein TIM barrel |
|---|
| Protein accession | YP_002883371 |
|---|
| Protein GI | 229821845 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0558916 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGGAG CGGGCCTCGA GCGCCTCTCC CTCAACACGG CGACGGTCAA GCGCGCGACT
CTCGGCGAGG CCGTGGACGT CGCAGCGCGC GCCGGGTACG GCGCCGTCGG ACTGTGGCGC
GACCGCGTCG AGGAGGCGGG GGTCGCCCCG ACCGCACGGA TCGTGCGCGA CGCCGGCCTG
CGGGTCTCGT CCCTGTGCCG CGGCGGGTTC CTGACGGCGT CGACCGACGA CGGCGTCCGC
GCGGCTCTCG ACGACAACCG TCGGGCGATC GACGACGCGG CAGCGGTGGG GACGACCGAG
CTCGTCATGG TCGTGGGCGG GCTGCCCGCC AGCGGCGAGC CCGGTGGCCC GCCGCGCGAG
GGCGCCGCAC CCGGCGACCG TGACGTCGTC GCCGCCCGCG CCCGCGTCGC GGACCGCCTC
GCCGACCTCG CCCCCCACGC GGCCGACGCC GGCGTCCGCC TCGCCCTCGA GCCGCTGCAC
CCGATGTTCG CCGCGGACCG GGCGGTCATC TCGACGCTCG CCCAGGCCCT GGACCTCGCC
GCGCCGCACC CGGCGGACGT CGTCGGCGTC GTCGTCGACA CCTACCACGT GTGGTGGGAC
CCCGCCCTGG AGACGTCGGT CGCGAGAGCC GGCGCGGAGC GCCGGATCGC GTCGTACCAG
GTCTGCGACT GGAACCTGCC GCTCGCCGCC GACCCGCTCC TCTCCCGCGG CTACCCGGGC
GACGGCTACG TCGACTTCCC GGCGATCACG CGCCTGGTGG CCGACGCCGG CTACGACGGC
GACGTCGAGT GCGAGATCTT CCACGCCGAC GTGTGGGCGA CGCCGGCAGC GGACGTGGCC
CGGATCGTCG CCGAGCGGTA CGCCACGCAC GTGGCACCGC ACCTGACCCG AGGGTGA
|
|---|
| Protein sequence | MTGAGLERLS LNTATVKRAT LGEAVDVAAR AGYGAVGLWR DRVEEAGVAP TARIVRDAGL
RVSSLCRGGF LTASTDDGVR AALDDNRRAI DDAAAVGTTE LVMVVGGLPA SGEPGGPPRE
GAAPGDRDVV AARARVADRL ADLAPHAADA GVRLALEPLH PMFAADRAVI STLAQALDLA
APHPADVVGV VVDTYHVWWD PALETSVARA GAERRIASYQ VCDWNLPLAA DPLLSRGYPG
DGYVDFPAIT RLVADAGYDG DVECEIFHAD VWATPAADVA RIVAERYATH VAPHLTRG
|
|---|
| |