Gene Bcav_1888 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_1888 
Symbol 
ID7860510 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand- 
Start bp2151785 
End bp2152408 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content68% 
IMG OID643865979 
ProductSuperoxide dismutase 
Protein accessionYP_002881906 
Protein GI229820380 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0605] Superoxide dismutase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.544416 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.00197441 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCGGAGT ACAGCCTGCC CGAGCTCCCC TACGACTACG CCGCTCTCGA GCCCCACATC 
TCGGGCAAGA TCATGGAGCT GCACCACGAC AAGCACCACC AGGCGTACGT GACCGGCGCC 
AACACGGCCC TCGAGAAGCT CGCCGAGGCC CGGGCGTCCG GTGACCTCGC TGCCGTGAAC 
CTGCACGAGA AGAACCTCGC GTTCAACCTC GGTGGCCACG TCAACCACTC GGTCTTCTGG 
ACGAACCTCT CCCCCGAGGG CGGCGAGCCC GCCGGTGAGT TCGGCGCGGC CGTCGACGAG 
TTCTTCGGTG GCGTGGAGGC GTTCAAGAAG CACTTCTCCG CCGTCGCCGC CGGCGTGCAG 
GGCTCCGGCT GGGCCGTTCT CGCCTGGGAC TCCATCGGGT CGAAGCTCGT GATCGTGCAG 
CTGTACGACC AGCAGGGCAA CCTGGCGCTC GGCCTCGTGC CGATCCTCAT GCTCGACGTG 
TGGGAGCACG CCTACTACCT CGACTACCTC AACGTGCGGG CCGACTACAT CGCGGCCTGG 
TGGAACGTCG TCAACTGGAA CGACGCCGCC GACCGCTTCA CGCGTGCGCG CACCCAGGCC 
GCGGGGCTCA TCGTCCCGGC CTGA
 
Protein sequence
MAEYSLPELP YDYAALEPHI SGKIMELHHD KHHQAYVTGA NTALEKLAEA RASGDLAAVN 
LHEKNLAFNL GGHVNHSVFW TNLSPEGGEP AGEFGAAVDE FFGGVEAFKK HFSAVAAGVQ 
GSGWAVLAWD SIGSKLVIVQ LYDQQGNLAL GLVPILMLDV WEHAYYLDYL NVRADYIAAW 
WNVVNWNDAA DRFTRARTQA AGLIVPA