| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_1422 |
|---|
| Symbol | |
|---|
| ID | 7860891 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | + |
|---|
| Start bp | 1624424 |
|---|
| End bp | 1626034 |
|---|
| Gene Length | 1611 bp |
|---|
| Protein Length | 536 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 643865509 |
|---|
| Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
|---|
| Protein accession | YP_002881442 |
|---|
| Protein GI | 229819916 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACGC TCCCCGCCCT CGCGGGCACC GCCGTCCAGG TCTACGACAC GACGTTGCGC
GACGGCGCGC AGCAGGAGGG CATGAACCTC ACCGTCGCCG ACAAGCTGGC GATCGCGCCG
CTGCTCGCGG AGCTGGGTGT CGCGATCATC GAGGGTGGTT GGCCCGGGGC GATCCCGAAG
GACACGGAGT TCTTCAAGCG CGCGGAGAAG GAGCTGGACC TCGGCGACGT CGAGCTGGCC
GCGTTCGGCT CGACCCGCAA GGCCGGGTCG AGGGCGCACG ACGACGCGCA GGTCCGTGCC
CTGCTCGACT CCGGCGCGCC GGTGGTCACG CTCGTCGCGA AGAGCGACAT CCGGCACGTC
GAGCGCGCCC TGCGCACCGA CGGCCCCGAG AACCTCGCCA TGATCGCCGA CACCGTGCGC
TACCTCGTGG GCGAGGGACG CCGCGTCATC GTCGACGCCG AGCACTTCTT CGACGGGTAC
GTCTTCGACG CCGACTACGC GCTCGCCGCC GTCGCCGCCG CGTTCGAGGC CGGCGCGGAG
ACAGTCACCC TGTGCGACAC GAACGGGGGC ATGCTGCCCG ACGGCGTCCA CGAGATCGTC
GCCGCCGTGC GCGCCCGCAG CGGCGGGCGG CTCGGCATGC ACGCCCACAA CGACTCCGGC
TGCGCCGTCG CCAACACGCT CGCCGCTGTC GCGGCCGGGG CGACGCACGT CCAGGGCACC
GTCAACGGGT ACGGCGAGCG GACCGGGAAC GCCGACCTCG TGGCCGTCGT CGCGAACCTC
GAGCTGAAGC TCGGCGCGAC CGCTCTCACC CCCGGCGGTC TCGACGACGC GATGCGCATC
TCGCACGCCA TCAGCGAGAT CACCAACATC AGCCCGTACG CCCGGCAGCC CTACGTCGGG
GCGAGCGCGT TCGCCCACAA GGCGGGTCTG CACGCGAGCG CCATCCGGGT GGATCCCGAC
CTGTACCAGC ACGCCGACCC CACGCGCGTC GGGAACGACA TGCGGATGCT CGTCTCCGAC
ATGGCCGGGC GCGCGTCCAT CGAGCTCAAG GGCCGCGAGC TGGGCTTCGA CCTGGCGGGG
CAGGACGACG TGCTCGGGCG CGTCACCCAC CGCGTCAAGG ACGCGGAGGC CCAGGGCTAC
ACGTTCGACG CCGCCGACGC GTCGTTCGCG CTGCTGCTGC GCGAGGAGGT CGACGGCGCC
CGCCCGCAGT TCTTCACGAT GGAGAGCTGG CGCGTGTCGG TGCACTACCT TCCCCGCCAC
AGCCCGGACA CGGACGCCGA GGCCACGGTC AAGCTGCACG CGGGCGGCGA ACGGATCGTC
GCGACCGGCG AGGGCAACGG TCCGGTCAAC GCGCTCGACC ACGCGCTGCG CCGGGCGCTG
CTCCCGGCCT ATCCCGAGAT CGCCGACTTC GAGCTCATCG ACTTCAAGGT CCGCCTCATC
GACACGTCGC ACGGCACGGA CGCCGTCACG CGGGTGCTCA TCGAGACGAC CGACGGGCAG
GACGTGTGGA GCACCGTCGG CATCGGCCCG AACATCCTCG AGGCGAGCTA CGAGGCCCTG
TCCGACTCGC TCGTGTTCGG GCTGCTCGCC CGGGGGGTCG AGCCGCGCTG A
|
|---|
| Protein sequence | MTTLPALAGT AVQVYDTTLR DGAQQEGMNL TVADKLAIAP LLAELGVAII EGGWPGAIPK
DTEFFKRAEK ELDLGDVELA AFGSTRKAGS RAHDDAQVRA LLDSGAPVVT LVAKSDIRHV
ERALRTDGPE NLAMIADTVR YLVGEGRRVI VDAEHFFDGY VFDADYALAA VAAAFEAGAE
TVTLCDTNGG MLPDGVHEIV AAVRARSGGR LGMHAHNDSG CAVANTLAAV AAGATHVQGT
VNGYGERTGN ADLVAVVANL ELKLGATALT PGGLDDAMRI SHAISEITNI SPYARQPYVG
ASAFAHKAGL HASAIRVDPD LYQHADPTRV GNDMRMLVSD MAGRASIELK GRELGFDLAG
QDDVLGRVTH RVKDAEAQGY TFDAADASFA LLLREEVDGA RPQFFTMESW RVSVHYLPRH
SPDTDAEATV KLHAGGERIV ATGEGNGPVN ALDHALRRAL LPAYPEIADF ELIDFKVRLI
DTSHGTDAVT RVLIETTDGQ DVWSTVGIGP NILEASYEAL SDSLVFGLLA RGVEPR
|
|---|
| |