Gene Bcav_1209 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_1209 
Symbol 
ID7858865 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp1372538 
End bp1373392 
Gene Length855 bp 
Protein Length284 aa 
Translation table11 
GC content77% 
IMG OID643865293 
ProductdTDP-4-dehydrorhamnose reductase 
Protein accessionYP_002881231 
Protein GI229819705 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1091] dTDP-4-dehydrorhamnose reductase 
TIGRFAM ID[TIGR01214] dTDP-4-dehydrorhamnose reductase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.867672 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCATCC TCGTGACCGG CGCCGGCGGC ATGCTCGCGC ACGACGTCGT CGCCCGCCTC 
GACGCCGAGC ACGAGGTGCT CCCCCGCGCG CGCCGGGACC TCGACGTCAC GGACGCCGAC
GCCGTGCGTC GTGCGGTGGC CCCCGGCACC GACGCCGTGA TCAATTGCGC CGCGTGGACG
GCCGTCGACG ACGCCGAGTC CCACGAGGGT GCCGCCTTCG ACCTCAACGC GCTCGCCCCG
GCGCACCTCG CACAGGCCTG CACGGCCGTC GGGGCGCGGC TGGTCCAGGT CTCGACCGAC
TACGTCTTCG ACGGAGCCGC CGCGCTCCCC TACGGCGAGG ACGCCCCCCT CCGCCCGGTG
TCCGCCTACG GGCGCACGAA GGCGGCCGGC GAGTGGGCCG TCCGAGCAGC CGGCGCCGAC
CATCTCGTCG TGCGCACCGC GTGGCTCTAC GGCGCCCACG GCGCCTGCTT CCCCCGCACG
ATGGCGCGCC TGGCCGCGGA ACGCGAGCGG ATCGACGTCG TCGACGACCA GCTCGGGCAG
CCGACGTGGA CGGCGGACGT GGCCGACGTC GTCGCGCGCC TCCTCGAGCG CGGGGCACCC
GGCGGCACGT ACCACGCGAC GGCGTCCGGG GAGGTGAGCT GGTACGGGTT CACGCGCGAG
ATCGTCGCGT CGCTCGGCCG GGATCCCGCC ATGGTGCGCC CGACCACGAG CGCCGCGTTC
TCGCGGCCCG CGCCGCGGCC CGCGTACTCG GTGCTCGGCC ACGAGGCGCT CGTGCGTGCC
GGCCTCGCGC CAATCGGCGA CTGGCGCGAG CGCTGGCGCG AGGCCGCGCC GGCGGTGCTC
GGCGGCCCCG CGTGA
 
Protein sequence
MRILVTGAGG MLAHDVVARL DAEHEVLPRA RRDLDVTDAD AVRRAVAPGT DAVINCAAWT 
AVDDAESHEG AAFDLNALAP AHLAQACTAV GARLVQVSTD YVFDGAAALP YGEDAPLRPV
SAYGRTKAAG EWAVRAAGAD HLVVRTAWLY GAHGACFPRT MARLAAERER IDVVDDQLGQ
PTWTADVADV VARLLERGAP GGTYHATASG EVSWYGFTRE IVASLGRDPA MVRPTTSAAF
SRPAPRPAYS VLGHEALVRA GLAPIGDWRE RWREAAPAVL GGPA