Gene Bcav_1028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_1028 
Symbol 
ID7859801 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp1171184 
End bp1172068 
Gene Length885 bp 
Protein Length294 aa 
Translation table11 
GC content78% 
IMG OID643865112 
ProductUracil-DNA glycosylase superfamily 
Protein accessionYP_002881051 
Protein GI229819525 
COG category[L] Replication, recombination and repair 
COG ID[COG1573] Uracil-DNA glycosylase 
TIGRFAM ID[TIGR00758] uracil-DNA glycosylase, family 4 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.250169 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0211091 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGACGGCA CGTCGTCGTC GGCCCGGAGC CTGCCGCACC CGGTCACCGG CGCGGTGTTC 
GCGTCGCCGG TCCCGCCGGG CGCCGGTTGG CCGGACGACG TCGCGACGGC GCGCACCCCC
CGCGCGCGGG ACGCGGCCGC CGTCGAGCGC CTCGCCGCGA CCTCCCGCAC GCTGACGCAG
CTCGACGCGC GCTCCAGCGT GTGCCGCGCC TGCCCGCGAC TCGTCGCGTG GCGGGAGGAC
GTCGCGCACA CGAAGCGGCG CGCGTTCGCC GCCGAGCCGT ACTGGGGTCG GCCCGCACCT
GGGCTCGGGG ACCCCGCCGC ACACCTCGTG ATCGTCGGCC TCGCCCCGGC GGCGCACGGC
GCCAACCGCA CCGGCCGCCT GTTCACGGGC GACCGCTCCG GCGACTGGAT CGTCGCCGCC
CTGCACCGGG CCGGATACGC CAACCAGCCC ACCACCGAGG CCGCCGGCGA CGGACTCGAG
CTGCGCGGTG CGCGGATCGT GGCAGCCGTG CGCTGCGCCC CGCCGGACAA CGCCCCGACC
CCGGACGAGC GCGCGACGTG CGCCGGCTGG CTGCGTCGCG AGCTCCAGCT CCTCGCGCCC
ACGACGACGG CGCTCCTCGC CCTCGGGCAG GTGGCGTGGC AGGCCACGTT CGCCGCCCTC
AAGGACCTCG GCTGGTCGGT GCCGAGGCCG CGCCCGGCGT TCGGGCACGG CGCCCGCGCG
TCGGTGCGGG CGCCGGACGG GCGCGAGGTG CTCGTCGTCG CGAGCTACCA CGTGTCGCAG
CAGAACACGT TCACGGGGCG GCTCACGGAG GCCATGCTCG ACGACGTCCT CGCTGTGTGC
AGAGCCACAG GCCCCGGCTG GGCCGACGCC GAAACCCGGT CCTAG
 
Protein sequence
MDGTSSSARS LPHPVTGAVF ASPVPPGAGW PDDVATARTP RARDAAAVER LAATSRTLTQ 
LDARSSVCRA CPRLVAWRED VAHTKRRAFA AEPYWGRPAP GLGDPAAHLV IVGLAPAAHG
ANRTGRLFTG DRSGDWIVAA LHRAGYANQP TTEAAGDGLE LRGARIVAAV RCAPPDNAPT
PDERATCAGW LRRELQLLAP TTTALLALGQ VAWQATFAAL KDLGWSVPRP RPAFGHGARA
SVRAPDGREV LVVASYHVSQ QNTFTGRLTE AMLDDVLAVC RATGPGWADA ETRS