| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6336 |
|---|
| Symbol | |
|---|
| ID | 4315240 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | + |
|---|
| Start bp | 942445 |
|---|
| End bp | 943644 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638154180 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_778214 |
|---|
| Protein GI | 115361077 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4214] ABC-type xylose transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACCG AACTGTCTTC CTCTTCCGCC GTGCCGCCGG ACGCCGACGC GCGCCGCGGG
CACCGCCATC CGTTGCGTCA GGTCTTCGTG CGCTACAAGG TGCTCGCGCT GCTGTTCGCG
GTCGCGGCGA TCTGGGTGTT CTTTTCGGTG CTGACCGACG GGGCATTCGT CACGCCGCGC
AACGTGTCGA ACCTGCTGCG GCAGATGTCG ATCACCGGAA TGCTCGCGTG CGGGATGGTG
TTCGTGATCA TCGCGGGCGA GATCGACCTG TCGGTCGGCT CGTTGCTCGG GCTGCTCGGC
GGCGTCGCGG CGATCCTCGA CGTCAATCGG CACTGGCCCG TCGCCGCGAC GGTGCCGGCG
GTGCTCGCGC TCGGCGTGCT GGTCGGGTTG TTCAACGGCT GGTGGTCGAC CTACCGTCGC
GTGCCGTCGT TCATCGTCGG GCTGGGCGGA ATGCTCGCGT TCCGCGGCAT CCTGCTCGGC
GTGACGGGCG GCTCGACGAT CGCGCCGGTG TCCGACGGCT TCGTGTTCAT CGGTCAGGGC
TACCTGCCGC GCATGGCGGG CGACGGCCTC GCGCTGCTGC TGTTCGCGCT CGTCGCGCTG
CTGGTCGTCC GGCAGCGCGG CACGCGGCGC CGTTACCGGC TCGCGGTCGC GCCGCTGTGG
CAGGACGTCG CGAAGGTCGT CGGCGCCGGG GCCGTGCTGT TCGCGTTCGT CGCGATGCTC
GACCGCTACG GCGGCATTCC CGTGCCCGTG CTGCTGCTGC TCGCGCTGCT CGGCGCGTTC
TCGTGGATCG CGACGCAGAC CGTGTTCGGC CGACGCATCT ATGCGGTGGG TTCGAACCTG
GAGGCGACGC GGCTGTCGGG CGTCGATACG GATCGCGTGA AGCTGGCGAT CTTCGCGCTG
ATGGGGCTGA TGTGCGCGTT CGCGGGGATC ATCAATACCG CGCGGCTCGC GGCCGGCTCG
CCGTCGGCCG GCACGATGGG CGAACTCGAC GCGATCGCCG CGTGCTTCAT CGGCGGCACG
TCGATGCGCG GCGGGTCGGG CACCGTCTAT GGCGCGCTGA TCGGTGCGCT CGTGATGGCG
AGCCTCGACA ACGGGATGTC GATGCTCGAC GTCGACGCGT ACTGGCAGAT GATCGTCAAG
GGCGCGGTGC TGGTACTGGC GGTGTGGATC GACGTGGTGT CGCGTTCGAA CCGGCGGTGA
|
|---|
| Protein sequence | MNTELSSSSA VPPDADARRG HRHPLRQVFV RYKVLALLFA VAAIWVFFSV LTDGAFVTPR
NVSNLLRQMS ITGMLACGMV FVIIAGEIDL SVGSLLGLLG GVAAILDVNR HWPVAATVPA
VLALGVLVGL FNGWWSTYRR VPSFIVGLGG MLAFRGILLG VTGGSTIAPV SDGFVFIGQG
YLPRMAGDGL ALLLFALVAL LVVRQRGTRR RYRLAVAPLW QDVAKVVGAG AVLFAFVAML
DRYGGIPVPV LLLLALLGAF SWIATQTVFG RRIYAVGSNL EATRLSGVDT DRVKLAIFAL
MGLMCAFAGI INTARLAAGS PSAGTMGELD AIAACFIGGT SMRGGSGTVY GALIGALVMA
SLDNGMSMLD VDAYWQMIVK GAVLVLAVWI DVVSRSNRR
|
|---|
| |