| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6159 |
|---|
| Symbol | |
|---|
| ID | 4315063 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | - |
|---|
| Start bp | 723676 |
|---|
| End bp | 725529 |
|---|
| Gene Length | 1854 bp |
|---|
| Protein Length | 617 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 638154003 |
|---|
| Product | RNA polymerase, sigma 28 subunit |
|---|
| Protein accession | YP_778037 |
|---|
| Protein GI | 115360900 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGCGC GGCACGCGGT GGTGCCCACG GCCGGCCGCG ACGACGGCGC AGCGCCGCAC
GCCGTCGCGC ACCTCCACGC ACTGATCGCG ACCGGCCTGT CGCGCGGCTT CGTCACGCGC
GGCGACATCA TCGACGGGCT ACCCGACGAT GATGCGAATG ACAGCGGCGT CGATGCGGTT
GCGGCGGTGC TCGGCGAACT CGGCATCGCG GTGTCCGACA GCGCCGATAC CGCGAGCGGC
TGGACCCTCG AGCGCTACTT CCGGCCCGCG CCGCCCGCGC GCGCATGGGC CGACGGCGCC
GGCGCGCTCG CCGCGGCCGA CCTGCTCGCG CCGCGCACGA CCGATCCGGT CCGGCTGTAT
CTGCGCGAGA TGGGCACGAC GCCGCTCCTC ACGCGCGACG AGGAGTTCGC GTATGCGCGA
CGGATCGAGC GTGGCCGCGC CGCGTCGGCC GCGGTGCTGT GCGGCGATCC AGATGCGCTC
GACGCGCTCG TGTCGATTCG CGTCGAGATC GCGCAATGCC GGACCGCCGC GTCGACCTAT
GTGATCTTTC TCGACGACGG CCCGCGCGAC GACACATCGG CCGATCACGC CGAGGCGGGC
ACGTCGGCCA CCGCCACCGG CGAACCCGCG CGCGACGACG ATACGCAGAC GGAAGATTCG
GCCTGGCGCG ACGCGGTGGT GGCGCGGCTC GCACGCATCG ATGCACTTGC GCACGGCATG
CGCGCGGCAC TGGCGTCCGG TGGCAGCGCT TGCGCCGCGT ATCGCTCGGA CGTACGCGAC
GCCGCGGCAC TGCTCCGCAC CTTGGGCTTG TCCGCCCGCG CGCTCGAACG GATGAGCGAG
CCGCTGCGCG GCCGCGCACG CCGGCACCGC GCGTTGCGCG GCCGACTGGA GCGGATGCTG
GCCGACGTCG GCATCCCGCC GTCGTTCGCA CACGCGGCCG ACGACGATCA CGCCGGCTGG
CTCGCGTCAT GCATCGCCGC ACACCCGGCC TGCGCGTCGA CGCTGACGAG ACGCGCGGCC
GAGTTCGTCG ATGCACGCGA CGCGATCCTG CGCGCGGCCC CCGCATCGGA ACTGCCGCCC
GGCGCGACCG CGTCGCTCGA TGCACGGCTC GGCGCGATCG AACGCGCGAT GCAGCCGGCG
AAGGCGGGTT TGTTCGATGC GAACCTGCGG CTCGTCGTGT CGATCGCGAA GCGATATCCG
GATCGCGGCC TGCCGTTCGC GGACCTGATC CAGGAAGGCA ACATCGGACT GTTGAAGGCG
ATCGAGCGCT ACGACCACCG GCGCGGTTTC CGGTTCTCGA CTTACGCGAC CTGGTGGATC
CGGCAGGCGA TCACGCATGC ACTCGCCGAC CTCGGCCGCA CGATCCGCGT GCCGACGCAT
ACGGTCGACG CGCTGAACAA GCTGTCGCGG CTCGCGCGCG AGCACCGGCA GCGCGCGGGC
ACGGCGGCGA CGCCGGCCGA ACTGGCCGTC CACATGGGCG AGCCGGTCGA CAAGGTGCGC
GAGCTGATGG CCATCGTGAA GGAACCGGTG TCGGCCGACG TGCCGGTCTC GCCGGAAGGC
GACATGACGT TCGCCGACGT CGCGCCGGAC ACGACGACGC CCTCTCCCGA AGACGCGGCC
GGCGCCACGC AGTTGCGCCG CACGATCGCT GCCGTGATCG ACCGGCTGCC GCCGCGCGAG
GCGATGGTCC TCAAGCTGCG CTATGGGCTG CACACGGACG AAGGCTGCTC GCTGCGCGAC
ATCGGCCGCC AGCTGAACCT GTCCGCGGAA CGCGTGCGGC AGATCGAGGC GTCGGCGCTC
GCCCGCCTTC GAGCGTCCGA CACGCTCGGC CTGCTCCGGT CGTTCGTCGC GTAG
|
|---|
| Protein sequence | MPARHAVVPT AGRDDGAAPH AVAHLHALIA TGLSRGFVTR GDIIDGLPDD DANDSGVDAV
AAVLGELGIA VSDSADTASG WTLERYFRPA PPARAWADGA GALAAADLLA PRTTDPVRLY
LREMGTTPLL TRDEEFAYAR RIERGRAASA AVLCGDPDAL DALVSIRVEI AQCRTAASTY
VIFLDDGPRD DTSADHAEAG TSATATGEPA RDDDTQTEDS AWRDAVVARL ARIDALAHGM
RAALASGGSA CAAYRSDVRD AAALLRTLGL SARALERMSE PLRGRARRHR ALRGRLERML
ADVGIPPSFA HAADDDHAGW LASCIAAHPA CASTLTRRAA EFVDARDAIL RAAPASELPP
GATASLDARL GAIERAMQPA KAGLFDANLR LVVSIAKRYP DRGLPFADLI QEGNIGLLKA
IERYDHRRGF RFSTYATWWI RQAITHALAD LGRTIRVPTH TVDALNKLSR LAREHRQRAG
TAATPAELAV HMGEPVDKVR ELMAIVKEPV SADVPVSPEG DMTFADVAPD TTTPSPEDAA
GATQLRRTIA AVIDRLPPRE AMVLKLRYGL HTDEGCSLRD IGRQLNLSAE RVRQIEASAL
ARLRASDTLG LLRSFVA
|
|---|
| |