| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5904 |
|---|
| Symbol | |
|---|
| ID | 4314809 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | - |
|---|
| Start bp | 386295 |
|---|
| End bp | 387272 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 638153744 |
|---|
| Product | dihydroorotate dehydrogenase family protein |
|---|
| Protein accession | YP_777783 |
|---|
| Protein GI | 115360646 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0167] Dihydroorotate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01037] dihydroorotate dehydrogenase (subfamily 1) family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.475547 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00651291 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGGCTGACC TGAGCGTACG CGTGGGCGAA CTGCGCCTGC GCAATCCCGT GATGCCGGCA
TCCGGCTGTT TCGCGATCGA GTATCGCGAT GCGCTCGACC TGACCGGGCT CGGCGCGCTC
GTGATCAAGA GCGTGTCGCC CGTCAGCCGC CCGGGCAACC CGACGCCGCG TGTCGCCGAC
GCGGGTGACG GCATGCTGAA TTCGATCGGC ATTCCGAGCC GCGGCATCGA CGACTATCTC
GAACACGTGC TGCCCGCGTA CACGGGCCAC GGCACGCCGG TCGTCGCGTC GGTGTCCGCC
GATACGGCGG ACGCGTTCGC GCGCGCGTGC GAGGCGCTGT CGCGGCCGGA CGTCGCGGCG
ATCGAGGCGA ACATCTCGTG CCCGAATCTC GAGGCGGACG GCATGGCGTT CGGGATGGAC
GCGGGCATGA CCCGGCAGGT CGTCGACGCG ATCCGCACGC GCACCGGGCA TCCGCTGTGG
GTGAAGCTGA CGCCGAACGC GGGCAACATC GCGAAGATCG CGCAAGCGGC GCAGGACGCG
GGCGCCGACG CGATCGTGAT GGGCAACACG GTGCTCGGCA TGTCGATCGA CGTGCGCACG
CGCCGGCCGT CGCTCGGCAA CGTGATGGGC GGCCTGTCCG GGCCGTCGAT CAAGCCGATC
GCGCTGCGGC TCGTCCACCA GTGCTACCGC GCCGTGTCGA TTCCGGTGAT CGGCTGCGGC
GGCATCCGGA GCGCCGCCGA CGCCATCGAG TTCCTGCTCG CCGGCGCGAG CGCGGTGCAG
GTGGGCACTG CGTCGTTCCG CGATCCGGGC GTGATGCGCA CGATCATCGA CGGGCTCGAG
CAGTTTTGCG CGGACGAGGG CATCGGCGCG ATCGCGTCGC TGACCGGGCA GGTCAGGCTC
GACGCGGAGC TGAGCGAGCG CTGGCAGCGC TTTTGCGCGG CGCCGGCGCG CGCGGGCGGC
ACGACGGCGG GGGCGTGA
|
|---|
| Protein sequence | MADLSVRVGE LRLRNPVMPA SGCFAIEYRD ALDLTGLGAL VIKSVSPVSR PGNPTPRVAD
AGDGMLNSIG IPSRGIDDYL EHVLPAYTGH GTPVVASVSA DTADAFARAC EALSRPDVAA
IEANISCPNL EADGMAFGMD AGMTRQVVDA IRTRTGHPLW VKLTPNAGNI AKIAQAAQDA
GADAIVMGNT VLGMSIDVRT RRPSLGNVMG GLSGPSIKPI ALRLVHQCYR AVSIPVIGCG
GIRSAADAIE FLLAGASAVQ VGTASFRDPG VMRTIIDGLE QFCADEGIGA IASLTGQVRL
DAELSERWQR FCAAPARAGG TTAGA
|
|---|
| |