| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5565 |
|---|
| Symbol | |
|---|
| ID | 4314454 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | - |
|---|
| Start bp | 2639127 |
|---|
| End bp | 2639909 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638153407 |
|---|
| Product | cationic amino acid ABC transporter, periplasmic binding protein |
|---|
| Protein accession | YP_777446 |
|---|
| Protein GI | 115360308 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.857563 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAGAC TGATTGCCGC CGTTTCGATC GCCCTGCTCG CGGTATCGGC GGGTCCCGCC
GCCGCGAAGG ACTGGACCAC GCTGCGCTTC GGCACCGACG CCAGCTATGC ACCGTTCGAA
TCGAAGGCGC CCGACGGCAA GCTCGTCGGC TTCGACATCG ATCTCGGCAA CGAAATCTGC
GCGCGGCTGA AGGCGAAGTG CGTGTGGCTG GAGAACGATT TCGACGGCAT GATCCCGGCG
CTGAAGGCGA AGAAGTTCGA CGCGGTGCTG TCGTCGATGT CGATCACGCC GCAACGCGCG
GAACAGATCG GCTTCACGAC GAAGATCTAC AACCAGCCGA CGCGGCTCGT CGTGAAGAAG
GGTTCATCGC TGCTGCCGAC GGCCGAATCG CTGAAGGGCA AGTCGATCGG CGTCGAGCAA
GGCACGACGC AGGAAGCGTA TGCGAAGGCG TACTGGGCGA AGCAAGGCGC GAACGTCGTG
TCGTACCAGA ACCAGGACGG CGTGTATGCG GACCTCACGT CGGGCCGCCT GGACGCCGCG
CTGCAGGACG AGGTGCAGGC CGCGATCGGG TTCCTGAAGT CGCCGCGCGG CGCGGGCTAC
CAGTTCGTCG GGCCCGAACT CATCGACGAG AAGGTGCTCG GCATCGGCGC CGGCATCGGG
CTGCGCAAGG AAGACACCGA CCTGAAGGCG AAGATCGACC GCGCGATCCT CGACATGGTC
AAGGACGGCA CCTACAAGCG GCTCGCGTCG AAGTACTTCG ACTTCGATAT CTACGGCGGC
TGA
|
|---|
| Protein sequence | MKRLIAAVSI ALLAVSAGPA AAKDWTTLRF GTDASYAPFE SKAPDGKLVG FDIDLGNEIC
ARLKAKCVWL ENDFDGMIPA LKAKKFDAVL SSMSITPQRA EQIGFTTKIY NQPTRLVVKK
GSSLLPTAES LKGKSIGVEQ GTTQEAYAKA YWAKQGANVV SYQNQDGVYA DLTSGRLDAA
LQDEVQAAIG FLKSPRGAGY QFVGPELIDE KVLGIGAGIG LRKEDTDLKA KIDRAILDMV
KDGTYKRLAS KYFDFDIYGG
|
|---|
| |