| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4959 |
|---|
| Symbol | |
|---|
| ID | 4313850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 1974561 |
|---|
| End bp | 1976801 |
|---|
| Gene Length | 2241 bp |
|---|
| Protein Length | 746 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638152802 |
|---|
| Product | periplasmic sensor hybrid histidine kinase |
|---|
| Protein accession | YP_776842 |
|---|
| Protein GI | 115359704 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00168647 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0243136 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTCCG AACGTCCCGC CGACTCCCGC CCGCCCGCCT CCACGCCTGC CGACGACTGG
CAGGATGGCG GCAGTTATTC GGCCGGCGCG CCCGAGCACG ATTTCGCGGT CCGGCGCGTG
ACGCTGATCG TGCTGCTGGT CGCGGCGATC GTGCTGCCGT GCATCTACGT GTCGGTCATG
GCGTACAACG ACCTGAAGGC ACGCGAAGCC GCGGCGAGCG ACGTGACGAT GCGCACCGTG
CGCGTCGCCG AGGAGCATGC GCTCAAGGTG TTCGACCTGA CCGAGACGCT CGATGCGCGC
ATCGTCGACC TCGTGCAGGA CATGGACGAC GCCAGCGTGC GCCGCCAGGA ATCCGACATC
CACGAAGCGC TGAACACGAT CGGCGGCGGC TATCCGCAGG TGGCCGCGGT GTCGATCTTC
GGCGCGAGCG GCATGTTGCT CGCGAACAGC CTCTACTATC CGGCGCCCTA CGCGTCGATC
GCGAACCGCG ACGACTTCGC CGGCATTCGC GACGGCAAGG TCATCGAACA TATCTCGCGG
CTGATGATGG GGCCGCTCAA GCTCGAGAAC ATCCCCGTGT TCAACACGGG CGTCGCGCGC
CGTCATAGCG ACGGTTCGTT CGCCGGGATG GTGTCGATCG CGCTGAAATC GTCGTACTTC
AATTCGTTCT ACCGCGAGCT CCTCGGCGGC GCGGCCACGC CGATGACGAT GGCGCTCGCG
CGCTCCGACG GCGCGGTGAT CGCGTCGTAT CCGCCGCCGC CGTCGCTCGC GCACACCGAT
CTCACGACCA CGTTCGGCAA CGAACGCAAC GATCCGCGCG CGGGCATCGT GCGCGTGCGT
CACGACGGCG CCAGCGAGAT CGTCGCGTAC CGCCAGGTCG GCAGCTATCC CGTGTACGTG
ACCTGCGCGT ACCGCACGTC GGCGATCCGG CGCGAATGGT ACGAACACTT GAGCGTGCTG
GTCATCTCGA TGTTCGCGCC GTCGATCGCG CTGTGGTCGG TGATCTGGCT GTCGCTGAAG
CGGCTGAAGG CGGAAGAGGA GGCGTGGGAT CGCTGGCAGG CGGAAGCGTC GATGCGGCGC
TCGATCGAAT CGGCGTACCG GCAGTCGCGC AAGATGCAGG CGCTCGGCAA CCTGGTCGGC
AGCGTCGCGC ACGATTTCAA CAACCTGCTG ATGATCATCT CGAGCAACGT GCAGATCGCG
CGGCGGCGCG GCGTCCAGCA TCTCGACAAG GAACTCGGCG CGATCGAACG CGCGCTGAAG
AACGGCCAGT CGCTCACGCG CCAGCTGCTC GGCGTCGCGC GCAAGCAGCC GCTGCACAAC
GAGACGATCG ACATCGGCCA ATGGGTCGGC ACGTGCCGCG AACTGCTGAA GACGTCGCTC
GGTTCGAAGT CGTCACTGGT CGTCGCGATC GAGCCCGGTG TATGGCCGAT CCGCGTCGAC
GTCGCCGAGC TCGAACTCGC GGTGATCAAT CTCGCCGTCA ACGCGCGCGA CGCGATGACG
ATCGGCGGCC GCTTCACGGT CGGCGCGCGC AACGTGACGC TGCGCCGCGA GGACGGCTTT
CCGCTGACCG GCGACTTCGT GCAGATCTCG CTCGACGATA CGGGCTCGGG CATGGCGCCC
GAGGTGCTCG CGCGCGCGTT CGAGCCGCTG TTCACGACGA AGGCGCAGGG GATGGGAACG
GGGCTCGGGC TGCCGCAGGT GTTCGCGTTC TGCGAACGCT CGGGCGGCCT GGCGACGATC
GACAGCGCGG TCGGCGCCGG CACGTCGGTG CGCCTCTACC TGCCGCGTGC AGGCGTCGAG
GACATCGTCG CGCGGCCACC GGCCGTCGCG CACGACACCA GCGCGCTCGC GGGCCTGCAC
GTGCTGCTGG TCGAAGACAA CAGCGAAGTC GCGGCCGGTA CGGAAGCCCT GCTCACGCTG
CTCGGACACC GCGTCACCTA TGCGCCCACC GCCGACGACG CGTTGCGCCT GATCGAAGGC
GCGGCCGCGA ACGACGCGTT CGACCTCGTC ATCTCGGATA TCCACATGCC GGGCCGCCTG
AACGGCATCG ATCTCGCCGA AGCGATCGAC AAGCGGCCGG GGAAGCTGCC CGTGATCCTG
GTCACGGGTT ACGCGGAGGA ACTCGACCGC ACGCGCACCG TCAACGTGCG CGTGCTGTCG
AAGCCGTTCG ACATCGCGCT GCTCGACGAG ATCCTGCTCG GCATCCGCGA AGCGCGCGAT
GCGCGGCACA CCGACACCTG A
|
|---|
| Protein sequence | MTSERPADSR PPASTPADDW QDGGSYSAGA PEHDFAVRRV TLIVLLVAAI VLPCIYVSVM
AYNDLKAREA AASDVTMRTV RVAEEHALKV FDLTETLDAR IVDLVQDMDD ASVRRQESDI
HEALNTIGGG YPQVAAVSIF GASGMLLANS LYYPAPYASI ANRDDFAGIR DGKVIEHISR
LMMGPLKLEN IPVFNTGVAR RHSDGSFAGM VSIALKSSYF NSFYRELLGG AATPMTMALA
RSDGAVIASY PPPPSLAHTD LTTTFGNERN DPRAGIVRVR HDGASEIVAY RQVGSYPVYV
TCAYRTSAIR REWYEHLSVL VISMFAPSIA LWSVIWLSLK RLKAEEEAWD RWQAEASMRR
SIESAYRQSR KMQALGNLVG SVAHDFNNLL MIISSNVQIA RRRGVQHLDK ELGAIERALK
NGQSLTRQLL GVARKQPLHN ETIDIGQWVG TCRELLKTSL GSKSSLVVAI EPGVWPIRVD
VAELELAVIN LAVNARDAMT IGGRFTVGAR NVTLRREDGF PLTGDFVQIS LDDTGSGMAP
EVLARAFEPL FTTKAQGMGT GLGLPQVFAF CERSGGLATI DSAVGAGTSV RLYLPRAGVE
DIVARPPAVA HDTSALAGLH VLLVEDNSEV AAGTEALLTL LGHRVTYAPT ADDALRLIEG
AAANDAFDLV ISDIHMPGRL NGIDLAEAID KRPGKLPVIL VTGYAEELDR TRTVNVRVLS
KPFDIALLDE ILLGIREARD ARHTDT
|
|---|
| |