| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4948 |
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| Symbol | |
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| ID | 4313839 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 1961847 |
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| End bp | 1964480 |
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| Gene Length | 2634 bp |
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| Protein Length | 877 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 638152791 |
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| Product | RND efflux transporter |
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| Protein accession | YP_776831 |
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| Protein GI | 115359693 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1033] Predicted exporters of the RND superfamily |
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| TIGRFAM ID | [TIGR03480] hopanoid biosynthesis associated RND transporter like protein HpnN |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0737697 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGACAT CTCTCATCGT CCGACTCGTC GCATTGTCGG TACGCCGCCC CGTCTGGGTC
GTCGTGCTGT CGCTCGTCAT TGCCGTCTTC AGCGGCGTCT ATGTCGCGCA GCACTTCAAG
ATCAACACGG ACATCAGCAA ACTGGTCGAC GCGGAACCGC AGTGGGCCGC GCTCGGCAAG
GCCGTCGACA AGGCCTTCCC GCAACGCAAC GGCACGATCC TCGCGGTGGT CGAGGCGCCG
GCGCCCGAAT TCGCGACGGC CGCCGCGCAC ACGCTCACCG AAGCGCTGCA GAAGCAGGCC
GACGCCGGCC GGATCGGTCA GGTCGCTGAA CCCGGCGGCG GGCCGTTCTT CGAGCACAAC
GGGCTGCTGT TCCTGTCGTC GCAGGAAGTG TCGGACACCA CGTCGCAGCT CGCGAGCGCG
CGTCCGCTCG TCAACGAACT CGCGAAGAAC CCGAGCCTGA CCGGGCTCGC GACCACGCTG
TCCACCACGC TCGGCCAGCC GCTCCTCACC GGCCAGGTGA AGCTGCCCGC GATGGCGAAG
CTGCTCGCGC GCAGCGCCGC GACGGTCGAC GACGTGCTCG CCGGCAAGCC GGCCGCGTTC
TCGTGGCGCG GGCTGGTCGA CAGCGATGCC GCGCGCCAGC CCGCCCGCGC GTTCGTCACC
GTGCAGCCGG TCGTGAACTA CGGCGCGCTG AAGGCCGGTG CGGAAACGAC CCAGGTGATC
CGCGACACCG CGCAAGCGCT CGGCCTCGAG CAACGCTACG GCGCGGTCGT GCGCCTGACC
GGCGAACAGC CGCTCGCCGA CGACGAATTC GCGTCGGTGG AAGACGGCGC CGCGCTCAAC
GGCGCGCTCA CGCTGCTCGC CGTGCTCGTG ATCCTGTGGC TCGCGCTGCG CTCGAAGCGG
ATGATCGGCT CGGTGCTCGT CACGCTGTTC GTCGGCCTCG TCGTGACGGC CGCGCTCGGC
CTCGCGATGG TCGGTTCGCT GAACATGATC TCGGTCGCGT TCATGGTGCT GTTCGTCGGC
CTCGGCGTCG ACTTCTCGAT CCAGTACGGC GTGAAGTACC GCGAGGAACG CTTCCGCGAT
GAACGCATCG ATCACGCGCT GATCGGCGCC GCGCACTCGA TGGGCATGCC GCTCGCGCTC
GCCACCACGG CGGTCGCGGC GAGCTTCTTC TCGTTCATCC CCACCGCCTA TCGCGGCGTG
TCCGAGCTCG GCCTGATCGC GGGCGTCGGG ATGTTCGTCG CGCTGCTGAC CACGCTCACG
CTGCTGCCCG CGCTGCTGCG CCTGTTCGCG CCGCCGGGCG AATCGAAGAC GCCGGGCTTT
CCGTGGCTCG CACCGGTCGA CGATTTCCTC GATCGCCATC GCAAGCCGAT CCTGATCGGC
ACGCTCGCGG TCGTGATCGG CGCGCTGCCG CTGCTCGCGT TCCTGCACTT CGACTTCAAC
CCGCTGCACC TGAAGGATCC GCACAGCGAA TCGATGGCGA CGCTGCTCGC GCTGAAGGAT
TCGCCCGAAG CGGCCGTCAA CGACGTCACG CTGCTCGCGC CGTCGCTCGC CGAGGCCGAC
GCGGCCGCGA AGCGCCTCGA CGCGCTGCCG GAAGTCGGCC GCACGACGAC GCTCACGACC
TTCGTCCCGG CCGACCAGCC GGCCAAGCGC GCGGCGATCG CCGCGGCCGC GAGCGAGCTG
CTGCCCGCGC TGACGCAGCC GGCCGCGCCG AAAGCGACCG ACGCGCAGCG CGTCGCCGCG
CTCAAGCGCG TGTCCGACCT GCTGGGCTAC GCGGCGGAAG ATCACCCGGG CCCGGGCGCG
GCTGCCGCCC AGCATCTGTC GGCATCGCTC GCGAAGCTCG CCGCCGCCGA CAGCGCGACG
CGCGACCGCG CCGAACACGC GTTCTCCGAC ACGCTGCGCA TCGCGCTGAA CCAGCTCGCG
ACGCTGCTGC AGCCGCAGGA CGTCACGCGC GAATCGCTGC CGCCGCCGAT CGTGCGCGAC
TGGGTCGCGC CGGACGGCCA TGCGCTCGTG CAGATTTCGC CGAAGGTGCC GAAGGGCGTC
GACCCGAACG ACGACACGAT GCTGCGCCGC TTCGCGAAGG CGGTGAAGGC CGCGGAGCCG
GGCGCGACCG GCGGCCCGAT CTCGATCCTG CATTCGGCCG ACACGATCAT CAACGCGTTC
CTGCACGCGG CGCTGTGGTC GATCATCTCG ATCACGATCC TGCTGTGGGT CACGCTGCGC
CGCTTCGGCG ACGTGCTGCG CACGCTGGTG CCGCTGCTCG TGTCGGGCCT CGTGACGCTC
GAGATGTGCG TGCTGCTCGG CATGTCGCTG AACTTCGCGA ACATCATCGC GCTGCCGCTG
ATGCTCGGCG TCGGCGTCGC GTTCAAGGTG TACTTCGTGA TGGCGTGGCG CGCGGGACAG
ACGGGCCTGC TGCACTCGAG CCTCACGCAC GCGGTGCTGT TCAGCGCCGC GACGACGGCA
ACCGCCTTCG GCAGCCTGTG GCTGTCGCAT CATCCGGGCA CGTCGAGCAT GGGCAAGCTG
CTCGCGCTGG CGTTGACCTG CACCCTGATC GGCGCCGTGG TGTTTCAGCC CGTCCTGATG
GGCAAACCGC GCGTCAAACG CGCCCAGAAC CAATCGCAAG GAAACAATGA ATAA
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| Protein sequence | MVTSLIVRLV ALSVRRPVWV VVLSLVIAVF SGVYVAQHFK INTDISKLVD AEPQWAALGK
AVDKAFPQRN GTILAVVEAP APEFATAAAH TLTEALQKQA DAGRIGQVAE PGGGPFFEHN
GLLFLSSQEV SDTTSQLASA RPLVNELAKN PSLTGLATTL STTLGQPLLT GQVKLPAMAK
LLARSAATVD DVLAGKPAAF SWRGLVDSDA ARQPARAFVT VQPVVNYGAL KAGAETTQVI
RDTAQALGLE QRYGAVVRLT GEQPLADDEF ASVEDGAALN GALTLLAVLV ILWLALRSKR
MIGSVLVTLF VGLVVTAALG LAMVGSLNMI SVAFMVLFVG LGVDFSIQYG VKYREERFRD
ERIDHALIGA AHSMGMPLAL ATTAVAASFF SFIPTAYRGV SELGLIAGVG MFVALLTTLT
LLPALLRLFA PPGESKTPGF PWLAPVDDFL DRHRKPILIG TLAVVIGALP LLAFLHFDFN
PLHLKDPHSE SMATLLALKD SPEAAVNDVT LLAPSLAEAD AAAKRLDALP EVGRTTTLTT
FVPADQPAKR AAIAAAASEL LPALTQPAAP KATDAQRVAA LKRVSDLLGY AAEDHPGPGA
AAAQHLSASL AKLAAADSAT RDRAEHAFSD TLRIALNQLA TLLQPQDVTR ESLPPPIVRD
WVAPDGHALV QISPKVPKGV DPNDDTMLRR FAKAVKAAEP GATGGPISIL HSADTIINAF
LHAALWSIIS ITILLWVTLR RFGDVLRTLV PLLVSGLVTL EMCVLLGMSL NFANIIALPL
MLGVGVAFKV YFVMAWRAGQ TGLLHSSLTH AVLFSAATTA TAFGSLWLSH HPGTSSMGKL
LALALTCTLI GAVVFQPVLM GKPRVKRAQN QSQGNNE
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