| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4420 |
|---|
| Symbol | |
|---|
| ID | 4313314 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 1356543 |
|---|
| End bp | 1357520 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638152261 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_776306 |
|---|
| Protein GI | 115359168 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.863458 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00323313 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCAT CCGTATTCGC TACAATCGAA AATCCGATTT TCTTTTGCGA GAGTCCGGCG
ATGATCGATC CGCTAGCCGA GGTCGTGACG CTGCTGCAGC CGAGCACGCG GTATTCCAAA
CTCGTTCACG GCGCGAGCCC CTGGCGCATC AGCCGGACGG TCGCCGGCGA GCCGTTCTAT
TGCGTGGTCC TGGAAGGTGG ATGCCGGGTC GCGATCGACG GGCATCCGCC GATCGAGCTG
CTACCCGGCG ATTTCGTGCT GATTCCGGCG GCCTACGGCG TCGCGATATC CAGTCTCGAA
CTGCCGCCGC CGGGCGTCGA AACGGCCGCG CCGGTCGTGC TCGACAATGG CGAATACCGA
ATCGGCGACG CGAGCCGCCC AGTCGACGCG CGCATGATGG CCGGCCACTG CAGCTTCAGT
TCGCCCGACG CTGCGCTGCT GGTATCGCTG CTGCCGCAAT ACGTGCACGT GCGCGGCGAA
CCGCGCCTCA CCACGCTCGT GCAACTGGTG CGGGACGAAT CGCGGGCGCA GCGGCCGGCG
CGCGAACTCG TGCTGTCGCG CCTCGTGGAA GTGCTGCTGA TCGAGGCATT GCGGTTTTCC
GCAGACACGG GCACATCACC CGGCCTCGTG CGCGGTCTCG CCGACAGCCG TCTCGCCGCC
GCGATCCGCG GAATGCACGA ACGCCCCGCG CACCCGTGGA CGGTCGTCGA GCTCGCGAAG
GAAGCGGCGC TGTCGCGTTC GACCTTCTTC GAACGCTTCA GCCGCGCGGT CGGCGTCGCG
CCGATGGAAT ACCTGCTCAC CTGGCGCATG GCGCTCGCGA AAAACCTGCT GCGCCGCGAC
GAAGGGCGCA TCGCGGAGAT CGCCGGGCGC GTCGGCTACA GTTCCGCGAG CACCTTCAGC
GTCGCGTTCA CGCGGCACGT GGGCCGGCCG CCCGCGCAAT ATGCGCGCGA CGAACGCGCG
GCGGCGAGCG ATGCATGA
|
|---|
| Protein sequence | MAASVFATIE NPIFFCESPA MIDPLAEVVT LLQPSTRYSK LVHGASPWRI SRTVAGEPFY
CVVLEGGCRV AIDGHPPIEL LPGDFVLIPA AYGVAISSLE LPPPGVETAA PVVLDNGEYR
IGDASRPVDA RMMAGHCSFS SPDAALLVSL LPQYVHVRGE PRLTTLVQLV RDESRAQRPA
RELVLSRLVE VLLIEALRFS ADTGTSPGLV RGLADSRLAA AIRGMHERPA HPWTVVELAK
EAALSRSTFF ERFSRAVGVA PMEYLLTWRM ALAKNLLRRD EGRIAEIAGR VGYSSASTFS
VAFTRHVGRP PAQYARDERA AASDA
|
|---|
| |