| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4159 |
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| Symbol | |
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| ID | 4313054 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 1077976 |
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| End bp | 1079205 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 638152000 |
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| Product | porin |
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| Protein accession | YP_776046 |
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| Protein GI | 115358908 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.129999 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.746797 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAACAG AGGGGCGGGA CATGAAGATC GGACGACGAC TGGCCGCAGC CGCGGCCACG
CTGGGTTGCA TGCATGCGCA CGCGCAGACC TCCGGCAGCG TGACGCTGTA CGGCACCGTG
GACACCGGCA TCATCTATTC GACGAACCAG CAGTTCACGC GCGCCGACGG CAGCACGGGC
GGCGGCCATG CGTGGCAGAT GGGCGGCGGC AACCTGGTGC CGTCCCGCTT CGGCTTCCAG
GGCGCCGAAC CGCTCGGCGG CGGGCTCGAT GCGGTGTTTT CGCTCGAGCA GCAGTTCCTG
TCCGCGAACG GGCAGGCGCT GCAGGGCGGC ACCGCGTTTA GCCGGCAGGC ATGGGTCGGG
CTGCGCCAGG ACGGGATCGG CACGCTCGGC CTCGGCCGGC AATACGACTC GTACACCGAC
ATGCTCGGCG CGTATGTCTC GAGCAACAAC TGGGCGACGC CGTACGGCTC GCATCTCGGC
GACGTCGACA ACCTGAATGC CGCGTTCAAC TTCAACAACG CGGTGAAGTT CACCAGCGCG
GACTTCCACG GCCTGACGGT CGGCGGCACG TTCAGCTTCG GCGGGCAGGC CGGCGACTTT
TCCGCGAAGC GCGGCTATGC GGTCGCGGCG ACCTATACCC GCGCGCCGAT CGCGTTCTCG
GTCGGCTATC TCGACCTGCA CCAGCCGCTC GACGCGGCGC TCGGCGGCGC GAGCGGCTAT
ATCGGCGACT TCGCGTGCAG CAACCCGGGC GCGATGTACT GCCTGCTGCA GGACGCCGGC
TCGATGCGCG CGTTCGGCGC GGGCGGCTCG GTGACACTCG GCGCGGCGAC GCTCGCGCTG
ACCTACACGC ACACGCGCCT GGGCGACAGC CGCTATTTCT CGACCGACGC GCAGCCGCGC
ACGCAGGCGT TCACGTTCGA CATCGGCGAG CTGAACGTCA CGTACATGTT CACGCCGGCG
CTGCAGGGCG GCGTCGCGTA TATCTTCAAC GCCGCGCACA CCGACGGACG CGGCACGACG
CGCTTCCATC AGATCAACGT CGGCACGAAC TACAGCCTGT CGAAGCGCAC CGCGCTGTAC
GCGGTCGCGA TCGGCCAGAT CGCGAGCGGC GCGGGGCTCG GCACCGACGC GAACGGCAAC
GCGGCGAACT ACGCGCAGAT CCCGGTGCTC GCGAACAGCA ATTCGAGCCG CCAGCTCGCG
GTGATGGCCG GGATTCGTGT GAACTTCTGA
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| Protein sequence | MTTEGRDMKI GRRLAAAAAT LGCMHAHAQT SGSVTLYGTV DTGIIYSTNQ QFTRADGSTG
GGHAWQMGGG NLVPSRFGFQ GAEPLGGGLD AVFSLEQQFL SANGQALQGG TAFSRQAWVG
LRQDGIGTLG LGRQYDSYTD MLGAYVSSNN WATPYGSHLG DVDNLNAAFN FNNAVKFTSA
DFHGLTVGGT FSFGGQAGDF SAKRGYAVAA TYTRAPIAFS VGYLDLHQPL DAALGGASGY
IGDFACSNPG AMYCLLQDAG SMRAFGAGGS VTLGAATLAL TYTHTRLGDS RYFSTDAQPR
TQAFTFDIGE LNVTYMFTPA LQGGVAYIFN AAHTDGRGTT RFHQINVGTN YSLSKRTALY
AVAIGQIASG AGLGTDANGN AANYAQIPVL ANSNSSRQLA VMAGIRVNF
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