Gene Bamb_3946 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3946 
Symbol 
ID4312842 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp840572 
End bp841858 
Gene Length1287 bp 
Protein Length428 aa 
Translation table11 
GC content70% 
IMG OID638151788 
Productmajor facilitator transporter 
Protein accessionYP_775834 
Protein GI115358696 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00710] drug resistance transporter, Bcr/CflA subfamily 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.501958 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCCCCC GACTTGCTCG GGGGTTTTTT TGCATCGCGC ACGGCCCCCG CGGCGCGTGC 
GAGGAGGGTA TCCGCTTGCA ACCGAACCTG CCGATTGCTT CCGAACCGGC GTCGCCCCGA
CACGCGACGC TGATCCTGTT GTGCGCGTTT TCCGTGCTGC CGTTGAGCAT GTTGCTGCCG
TCGTTGCCCG CGATCGCGCG CGACCTGCAC GCCGACTACG GGCTCGTCGC GCTGGCGCTC
GGCGGATACG CGGCGGTTGC CGCGTCGCTC GAGTTCGTGA TGGGGCCGTT GTCGGACCGG
TTCGGGCGAC GGCCGATCAT GCTGGCGAGC CTCGGCGTCT TCACGCTCGG GTCGCTGGGC
TGCGCGATGG CGACCGATAT CCGCATGTTC CTTGCGTGCC GGCTGATGCA GGCGGCGATC
ACGTCGGTCT ATCCGGTGTC GATGGCGACG CTGCGTGACA CCGCCGGCGG CGAACGCGCG
GCGAGCCGCA TCGGCTATGC GGCGATGGCG GCCGCGTTCG CGCCGATGAT CGGCCCGACG
CTCGGCGGCG CGCTCGATCA GACGGTCGGC TGGCGATCGA GTTTCTGGCT GCTCGGCGCG
GCCGGTATCG CGCTGCTCGG CTGGTGCGGG TTCGATCTCG CGGAAACCCA TACGAAGCGC
GCCACCACGC TTGCGCATCA GCTTCGCGCG TATCCGGCGC TGCTGCGTGC GCGCCGCTTC
TGGGCGTATG CGCTTTGCAT GGCCTTTTCG ACCGGCGCGT TCTACGCGTT CCTGGCCGGC
GCGCCGCTCG CCGCGCAAGC GAAGTTCGGC ATCCCGCCGG CGGAAATCGG TTTGTACATG
GGGACGATCA CGGCCGGCTT CGTGTGCGGC AGCTTTCTGG CCGCGCGTCA CGCGCACCGC
TATCCGCTCG CCGCGACGAT CCTGTGCGCA CGCGTGGTCG CATGCATGGG GCCGGTGATC
GCGCTCGCGC TGTTGTTTGG CGGTGCGACG CATGCGATCG CATGGTTCGG GCCGTGCGTG
CTGATCGGCG TCGGCAACGG GCTGTCGAAT CCCGGTGCGC ATGCCGGCGC GATGTCGGTG
CGGCCGGACC TGGCCGGTAG CGCATCGGGG CTGGTCGGGG CGATGACGAT CGCGGGCGGC
GCCGCGCTGT CGTCGCTGAC GGGCGCGGTG CTGACCGTGC GCAACGCAGG TTATGCGCCT
TTGGTCGTGA TGTTGCTGTC CGCGGCAATC GCGTTGGCGG CGGCCGGGTG CATCCGCATC
TTCGACGCAC GCGAACAGGA TGCGTGA
 
Protein sequence
MRPRLARGFF CIAHGPRGAC EEGIRLQPNL PIASEPASPR HATLILLCAF SVLPLSMLLP 
SLPAIARDLH ADYGLVALAL GGYAAVAASL EFVMGPLSDR FGRRPIMLAS LGVFTLGSLG
CAMATDIRMF LACRLMQAAI TSVYPVSMAT LRDTAGGERA ASRIGYAAMA AAFAPMIGPT
LGGALDQTVG WRSSFWLLGA AGIALLGWCG FDLAETHTKR ATTLAHQLRA YPALLRARRF
WAYALCMAFS TGAFYAFLAG APLAAQAKFG IPPAEIGLYM GTITAGFVCG SFLAARHAHR
YPLAATILCA RVVACMGPVI ALALLFGGAT HAIAWFGPCV LIGVGNGLSN PGAHAGAMSV
RPDLAGSASG LVGAMTIAGG AALSSLTGAV LTVRNAGYAP LVVMLLSAAI ALAAAGCIRI
FDAREQDA