| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3871 |
|---|
| Symbol | |
|---|
| ID | 4312767 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 761646 |
|---|
| End bp | 763727 |
|---|
| Gene Length | 2082 bp |
|---|
| Protein Length | 693 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638151713 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_775759 |
|---|
| Protein GI | 115358621 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.284542 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGACC TCCCTCGTCT ACCGCTTCGC CCGCTCTCTC CCGTTTCGCT GATGCTGTTC
GCCGCCGTCG CACAAGCCCA GGCCGCCGAT ACGCCCGCCT CGCCAACCCC GACGCAGACC
ACGCCGCTCG CGCCGATCTT CGTGACCGCG AACCCGCTGG GCGACACCCA ATTGATCGCA
CCGACCGCGC AACTGTCCGG CGACGCGCTG ACGCGCCGCC AGGCCGATTC GCTCGGCGAG
ACGCTCAACG GCCTGCCTGG CGTGTCGACC ACCACCTACG GCCCGATGGT CGGCCGTCCG
ATCATCCGTG GGATGGACGG CGACCGGATC CGGCTGCTGC AGAACGGCGT CGCCGCCTAC
GACGCATCGT CGCTGTCGTA CGACCACGCG GTGCCGCAGG ACCCGCTGTC GATCGAGCGC
GTCGAGATCG TGCGCGGCCC GGCCGCGCTG CTGTACGGCG GCAACGCGGT CGGCGGCGTC
GTCAACACGA TCGACAACCG GGTTCCGCGC GAGGCGATCG AAGGCGTGAC AGGTGCGCTG
GATGCACGCT ACGGCGGCGC GAACTCGGTG CGCGCCGGCG CCGCGCAGGT CGAAGGCGGC
AACGGCCGCT TCGCGTTCCA TGTCGACGCA TTCGACCGCG AGGCCAGCAA GCTACGGATT
CCCGGCTATG CGCGCAGCGG CGCGCAACGC GCGATCGACG GCCCCGACAC GCCGCAGCCG
TACGGCAACG TACCGAACAG CGACGGCCGC GTGCACGGCG GCGCCGCCGG CGCGTCGTAC
ACGTGGGCCG ACGGTTTCGC GGGCCTGTCG TACAGCGGCT ATGAATCGAA CTACGGCTCC
GTCGCCGAGG ACGACGTGCG CCTGCGCATG CGCCAGGAAC GGCTCGCGTT CGCGTCCGAG
GTGCGCAATC TGAGCGGCCC GTTCACGAAA GTGAAGTTCG ACTTCGCGTA CACCGACTAC
CGCCACAAGG AAGTCGACAA CGGCGAGACG GCGACCACCT TCCGCAACCG CGGCTACGAA
GCGCGCATCG AGGCGCGGCA TCGCAAGATC GGTCCGTTCG AAGGCGCGAT CGGCGTGCAG
TTCGGCCGGA ACACATTCTC GGCGCTCGGC GATGAACTGC TGGTGCCGTC GACGCGCACG
AACAGCGTCG CGCTGTTCGG CCTCGAGGAA TGGCAGGTCG ACCCGGCGCT GAAGCTGAGT
CTCGGCGGGC GCTTCGAGCA CGTGAAGGTC GATCCCGATC CGGCCGGCGT CGAGAAATTC
GCGGGCGCGC AGCCGCGCGA CTTCAACGCC GGCAGCGTAT CGGCCGGCGC CCTCTTCTCG
CTGACGCCCG TGTGGTCGGT CGCGGCGAAC GTCGCCTACA CGGAGCGTGC GCCGACCTTC
TACGAGCTGT ACTCGAACGG CCCGCACGAC GCGACCGGCC AGTTCCTGAT CGGCAACCCG
AACGCGTCGA AGGAAAAGGC CGTGTCGACC GACCTGTCGC TGCGCTATGC GAGCGGCCCT
AACCGCGGCA GCGTCGGGGT GTTCTACAAC CGCTTCTCGA ACTACCTGAC CGAGTACAAC
ACGGGCCGCG TCGTCGACGA CGACGGCGAA CCGGTCGCAC CCGGCGCCGA TGGCTCGCTC
AACGAAGCGA TCTATCGCGG CGTGCGCGCC GAGTTCTACG GCGTCGAACT CGACGGCAAG
TGGCGCGCGT TCTCGCGGCG CGGCCATACG GTCGATCTGG AACTGACCGC CGACTACACG
CATGCACGCA ACGTCGACAC CGGCCAGCCG CTGCCGCGCA TCGCGCCGCT GCGCGCGACG
CTCGCGGCCG ACTACGGTTA CGGCCCGTTC GGCGCACGCG CGCAGGTCAC GCATGCGTGG
TCGCAGCACC GCGTGCCCGA CAACGACTTT TCGACGGACG GCTACACGTC GCTCGGCGTG
ATGCTCACGT ACAAGTTCCG TGTCGGCGCG ACACACTGGC TCACGTACCT GCGCGGCGAC
AACCTGACGA ACCAGGAAAT CCGCTACGCG ACCTCGGTCG TGCGCGGCTT TGCTCCGCAG
GGCGGCCGCA GCGTGATGGC CGGGTTGCGC ACGACGTTCT GA
|
|---|
| Protein sequence | MRDLPRLPLR PLSPVSLMLF AAVAQAQAAD TPASPTPTQT TPLAPIFVTA NPLGDTQLIA
PTAQLSGDAL TRRQADSLGE TLNGLPGVST TTYGPMVGRP IIRGMDGDRI RLLQNGVAAY
DASSLSYDHA VPQDPLSIER VEIVRGPAAL LYGGNAVGGV VNTIDNRVPR EAIEGVTGAL
DARYGGANSV RAGAAQVEGG NGRFAFHVDA FDREASKLRI PGYARSGAQR AIDGPDTPQP
YGNVPNSDGR VHGGAAGASY TWADGFAGLS YSGYESNYGS VAEDDVRLRM RQERLAFASE
VRNLSGPFTK VKFDFAYTDY RHKEVDNGET ATTFRNRGYE ARIEARHRKI GPFEGAIGVQ
FGRNTFSALG DELLVPSTRT NSVALFGLEE WQVDPALKLS LGGRFEHVKV DPDPAGVEKF
AGAQPRDFNA GSVSAGALFS LTPVWSVAAN VAYTERAPTF YELYSNGPHD ATGQFLIGNP
NASKEKAVST DLSLRYASGP NRGSVGVFYN RFSNYLTEYN TGRVVDDDGE PVAPGADGSL
NEAIYRGVRA EFYGVELDGK WRAFSRRGHT VDLELTADYT HARNVDTGQP LPRIAPLRAT
LAADYGYGPF GARAQVTHAW SQHRVPDNDF STDGYTSLGV MLTYKFRVGA THWLTYLRGD
NLTNQEIRYA TSVVRGFAPQ GGRSVMAGLR TTF
|
|---|
| |