| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3578 |
|---|
| Symbol | |
|---|
| ID | 4312474 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | - |
|---|
| Start bp | 402782 |
|---|
| End bp | 403375 |
|---|
| Gene Length | 594 bp |
|---|
| Protein Length | 197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638151420 |
|---|
| Product | protocatechuate 3,4-dioxygenase, alpha subunit |
|---|
| Protein accession | YP_775466 |
|---|
| Protein GI | 115358328 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
|---|
| TIGRFAM ID | [TIGR02423] protocatechuate 3,4-dioxygenase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.28206 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.224149 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACGC TGAAGCAAAC CCCTTCGCAG ACGGTCGGCC CGTACTTCGC ATACGGCCTG
TGCCCGCAGC AATACGATTA CGACCTGAAG AGCCTGTTCA CGCCGGCGAT CGCCACGCCG
GACGCCGAAG GCGAGCACGT GCTGCTGGTG GGTCAGGTGT TCGACGGTGA CGGCAACGTC
GTCGGCGACG CGGTGCTCGA ATTCACGCAG GTGGATGGCG CGGGCCGTTA TCCCGCGTCG
CGTGACGACA TCGCGAAGTC CGGCTTCACG GGCTTCGCAC GCGTCGGCAC GGGCACTGAC
CCGCAGAACC GCTTCGTGGT CCCGACGATA AAGCCGGGCC GCATCGCCGC CGACGAAGCG
CCGCATATCA ACGTGACCGT GATGATGCGC GGGATCCTGA CCCACGCGTT CACCCGCGTG
TATTTCGACG ACGAAGCCGC GGCGAACGCG GCCGATCCGG TGCTGAACCT GGTGCCGGCC
GAACGCCGTG CGACGCTCGT CGCGAAGCGC GATGCGCAGC CGGGCCGCCC CGTCGTGTAC
CGCTTCGACA TCCGCATGCA GGGGCCGGAC GAAACCGTGT TCTTCGACGT GTGA
|
|---|
| Protein sequence | MTTLKQTPSQ TVGPYFAYGL CPQQYDYDLK SLFTPAIATP DAEGEHVLLV GQVFDGDGNV
VGDAVLEFTQ VDGAGRYPAS RDDIAKSGFT GFARVGTGTD PQNRFVVPTI KPGRIAADEA
PHINVTVMMR GILTHAFTRV YFDDEAAANA ADPVLNLVPA ERRATLVAKR DAQPGRPVVY
RFDIRMQGPD ETVFFDV
|
|---|
| |