Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_3377 |
Symbol | |
ID | 4312237 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | + |
Start bp | 172784 |
End bp | 175252 |
Gene Length | 2469 bp |
Protein Length | 822 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638151218 |
Product | formate dehydrogenase, alpha subunit |
Protein accession | YP_775265 |
Protein GI | 115358127 |
COG category | [C] Energy production and conversion |
COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
TIGRFAM ID | [TIGR01553] formate dehydrogenase, alpha subunit, proteobacterial-type |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.365346 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.791414 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCAGGTC TTGCCCCGAC GTTTGGCCGT GGAGCGATGA CGAACCATTG GGTCGACATC AAGAACGCGG ACGTGATTCT CGTGATGGGC GGCAATGCAG CCGAGGCCCA TCCGTGCGGT TTCAAGTGGG TAACGGAGGC GAAGGCGCAC CGCAAGGCGC GGCTGATCGT CGTCGACCCG CGCTTTACGC GTACGGCCTC GGTGGCCGAC TACTACGCGC CGATTCGCAC CGGCACCGAC ATCGTCTTCC TGGGCGGCGT CATCAACTAT CTGCTGACGA ACGACAAGAT TCAGCATGAG TACGTGAAGA ACTACACGGA CTTCTCGTTC ATCGTGCGCG AGGATTTCGC GTTCAACGAC GGCATCTATT CCGGCTATGA CGCCGAGAAG CACGCGTATC CGGACAAATC GAGCTGGGAC TACGAGCGCG GCGACGACGG CTTCGTGAAG GTCGACCCGA CGCTGCAGCA TCCGCGCTGC GTGTACAACC TGATGAAGCA GCATTACGCG CGCTATACGC CGGACATGGT CCAGCAGACG TGCGGCACGC CGAAGGAGAA ATTCCTGAAG GTGTGCGAGA TGCTCGCGAC CACGGCCGTT CCCGGCCGCG CCGGCACGGT GCTGTACGCG CTCGGCTGGA CCCATCACTC GATCGGCTCC CAGATGATCC GCACCGGCGC GATGGTGCAA CTGCTGCTCG GCAACATCGG CATCGCCGGC GGCGGGATGA ACGCGCTGCG CGGCCACTCG AACATCCAGG GCTTGACCGA CCTCGGGCTG ATGTCGAACC TGCTGCCGGG CTACATGACA CTGCCGATGC AGGCCGAACA GGATTTCGAC GGCTACCTCA AGAAGCGCAC GCAGCAGCCG CTGCGGCCCA ACCAGCTGAG CTACTGGAAG AACTACAAGG CCTTCCACGT GAGCTTCATG AAGTCGTGGT GGGGCGATGC GGCGACCGCC GAGAACAACT GGGGCTACGA CTACCTGCCG AAGCTCGACA AGCAGTACGA CCTGCTGCAG GCGATCGAGC TGATGAATGA AGGCAAGATG ACCGGCTACA TCTGCCAGGG CTTCAACCCG CTCGCGGCGG CGCCGTCTAA GGTGAAGACG GCCGCCGGGC TCGCGAAGCT GAAGTGGCTC GTCATCATGG ATCCGCTCGC GACCGAGACG TCCGAGTTCT GGAAGCATCA CGGCGACTAC AACGACGTCG ACGCGTCGAA GATCCAGACC GAGGTGTTCC GTCTGCCGAC CACCTGCTTC GCGGAGGAAG ACGGCTCGCT CGTGAGTTCG AGCCGCGTGC TGCAATGGCA CTGGAAGGGC GCGGAGCCGC CAGGCGAGGC GAAGAGCGAT CTCGAGATCA TGTCGGGGCT GTTCCTGCGC ATGCGCAAGA TGTACCAGAA GGACGGCGGC AAGTATCCGG ACCCGATCGT GAACCTGACC TGGCCGTATG CGAACCCGGA AAGCCCGACG CCTGCCGAGC TCGCAATGGA GTTCAACGGG CGTGCGCTTG CCGATCTGCC GGATCCTAAG GATCCGACGA AGACGCTCGT GAAGAAGGGC GAGCAACTCG CGGCGTTCGC GCAACTGAAG GACGACGGCA CGACCGCGAG CGGCTGCTGG ATCTTCTGCG GTGCATGGAC GCAGGCCGGC AACCAGATGG GGCGGCGCGA CAACTCCGAC CCGACCGGCA TCGGCCAGAC GCTGAACTGG GCGTGGGCAT GGCCCGCGAA CCGGCGGATC CTGTACAACC GCGCATCGTG CGACGTGAGC GGCAAGCCGT TCGATCCGAC CCGCACGCTG ATCGGCTGGA ACGGCAGCGC GTGGAAGGGC CCCGACGTAC CGGACTTCAA GGCGGATGAA CCACCTGAAA ACGGGATGGG GCCGTTCATC ATGAATCCGG AAGGCGTCGC GCGCTTCTTC GCGCGCGCGG GGATGAACGA AGGTCCGTTC CCCGAGCACT ACGAGCCGTT CGAGACGCCG CTTGCCGCGA ACCCGCTGCA CCCGAACAAC CCGCAGGCGC TGAACAATCC GGCCGCCCGC GTGTTCCCGG GTGACCGCGC GTCGTTCGGC AAGGTGTCCG AGTTCCCGCA CGTCGCGACG ACGTACCGGC TGACCGAGCA TTTCCACTAC TGGACCAAGC ATGCGCGGCT GAACTCGATC ATCCAGCCCG AGCAATTCGT CGAGATCGGC GAGGACCTCG CGAAGGAAGT CGGCGTCGCG CACGGCGATC GCGTGAAGGT GTCGTCCAAG CGAGGCTACA TCGTCGCGGT CGCACTCGTC ACGAAGCGGA TCAAGCCACT GACGATCGAG GGCAAGAAGG TCCAGACGGT CGGCGTCCCG TTGCACTGGG GCTTCAAGGG TCTGACGAAG CCCGGCTATC TCGCCAATAC CCTGACTCCG TCCGTAGGCG ACGGCAACTC GTACACACCG GAATTCAAGT CGTTCCTGGT GAAGGTCGAA AAGGCGTAA
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Protein sequence | MAGLAPTFGR GAMTNHWVDI KNADVILVMG GNAAEAHPCG FKWVTEAKAH RKARLIVVDP RFTRTASVAD YYAPIRTGTD IVFLGGVINY LLTNDKIQHE YVKNYTDFSF IVREDFAFND GIYSGYDAEK HAYPDKSSWD YERGDDGFVK VDPTLQHPRC VYNLMKQHYA RYTPDMVQQT CGTPKEKFLK VCEMLATTAV PGRAGTVLYA LGWTHHSIGS QMIRTGAMVQ LLLGNIGIAG GGMNALRGHS NIQGLTDLGL MSNLLPGYMT LPMQAEQDFD GYLKKRTQQP LRPNQLSYWK NYKAFHVSFM KSWWGDAATA ENNWGYDYLP KLDKQYDLLQ AIELMNEGKM TGYICQGFNP LAAAPSKVKT AAGLAKLKWL VIMDPLATET SEFWKHHGDY NDVDASKIQT EVFRLPTTCF AEEDGSLVSS SRVLQWHWKG AEPPGEAKSD LEIMSGLFLR MRKMYQKDGG KYPDPIVNLT WPYANPESPT PAELAMEFNG RALADLPDPK DPTKTLVKKG EQLAAFAQLK DDGTTASGCW IFCGAWTQAG NQMGRRDNSD PTGIGQTLNW AWAWPANRRI LYNRASCDVS GKPFDPTRTL IGWNGSAWKG PDVPDFKADE PPENGMGPFI MNPEGVARFF ARAGMNEGPF PEHYEPFETP LAANPLHPNN PQALNNPAAR VFPGDRASFG KVSEFPHVAT TYRLTEHFHY WTKHARLNSI IQPEQFVEIG EDLAKEVGVA HGDRVKVSSK RGYIVAVALV TKRIKPLTIE GKKVQTVGVP LHWGFKGLTK PGYLANTLTP SVGDGNSYTP EFKSFLVKVE KA
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