| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3243 |
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| Symbol | |
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| ID | 4312209 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 21947 |
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| End bp | 24700 |
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| Gene Length | 2754 bp |
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| Protein Length | 917 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 638151084 |
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| Product | DNA polymerase I |
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| Protein accession | YP_775132 |
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| Protein GI | 115357994 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0154529 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGAAG AACGAAATCT GGAAGGTAAG ACCCTGCTAT TGGTTGACGG TTCGAGCTAT
CTGTATCGGG CTTACCATGC GATGCCTGAT CTGCGTGGCC CTGGCGGGGA GCCGACCGGA
GCGCTCTACG GAATCATCAA CATGCTGCGC CGTATGCGCA AGGAAGTCAG TGCAGAGTAT
AGCGCTTGCG TGTTCGATGC AAAGGGCAAG ACGTTCCGCG ACGACCTTTA TGCCGACTAT
AAGGCAAACC GTCCGTCGAT GCCGCCTGAT CTCGCGTTGC AGGTCGAGCC GATCCACGGC
GCGGTGCGCG CGCTCGGCTG GCCGCTGCTG ATGGTCGAGG GTGTCGAAGC CGACGACGTG
ATCGGCACGC TCGCGCGCGA AGCCGAGCGG CACGGGATGA ACGTGATCGT GTCGACCGGC
GACAAGGATC TCGCGCAGCT CGTGTCCGAC CGCGTCACGC TCGTCAACAC GATGACCAAC
GAGACGCTCG ACCGCGACGG CGTGATCGCG AAGTTCGGCG TGCCGCCCGA GCGGATCATC
GACTACCTCG CGCTGATCGG CGACACCGTC GACAACGTGC CGGGCGTCGA GAAGTGCGGG
CCGAAGACGG CCGTGAAGTG GCTGTCGCAA TACGACAGCC TCGACGGCGT GATCGAACAC
GCGGGCGAGA TCAAGGGCGT GGTCGGCGAC AACCTGCGCC GCGCGCTCGA CTTCCTGCCG
CTCGGCCGCA CGCTCGTGAC CGTCGAGACG GCCTGCGATC TCGCGCCGCA TCTCGAATCG
ATCGAGGCGT CGCTGAAGAC GGACGGCGAA GCACGCCACC TGCTGCGCGA CATCTTCGCG
CGCTACGGCT TCAAGACGTG GTTGCGCGAA GTCGAGAGCG CGCCCGCCGA AGGCGGCGGC
GCCGATGCAC CGGAGGGCGA CCCTGCGCCG GTGATCGCGG CGGACATCGT CCGCGAATAC
GACACGATCC AGACCTGGGC GCAATTCGAC GCGTGGTTCG CGAAGATCGA TGCGGCCGCA
CTCACCGCGT TCGACACCGA AACCACCGCG CTCGACCCGA TGACCGCCCG CCTCGTCGGC
CTGTCGTTCT CGATCGAGCC GGGCAAGGCC GCGTATCTTC CGGTCGCGCA TCGCGGCCCC
GACCTGCCCG AGCAACTGCC GATCGACGAC GTGCTCGCGC GCCTGAGGCC GTGGCTCGAA
TCGGCCGATC GCAAGAAGGT CGGCCAGCAC CTGAAGTACG ACGCGCAGGT GCTCGCGAAC
TACGGCATCG CGCTGAACGG CATCGAGCAC GACACGCTGC TCGAATCGTA CGTGCTCGAA
TCGCACCGCA CGCACGACAT GGACAGCCTC GCGCTGCGTC ATCTGGGCGT CAAGACGATC
AAGTACGAGG ACGTGGCCGG CAAGGGCGCG AAGCAGATCG GTTTCGACGA AGTGGCGCTC
GAGCAGGCCG CCGCGTACGC GGCCGAAGAT GCGGACATCA CGCTGCAGCT TCACCAGGCG
CTGTATCCGC AAGTCGCGCG TGAAGCGGGC CTCGAGCGCG TGTATCGCGA CATCGAGATG
CCGGTATCGC TCGTGCTGCG CAAGATGGAG CGCACCGGCG TGCTGATCGA TGACGCGCTT
CTGCAGGCGC AAAGCACCGA GATCGCGACG CGCCTCATCG AGCTCGAAGG GCAGGCGTAC
GAACTGGCCG GCGGCGAGTT CAATCTCGGT TCGCCGAAGC AGATCGGGCA GATCTTCTTC
GAGAAGCTGC AGTTGCCGGT CGTAAAGAAA ACGCCGAGCG GCGCACCGTC GACCGACGAA
GAAGTGTTGC AGAAGCTGGC CGAGGATTAC CCGCTGCCGA AGCTGCTGCT CGAGCATCGC
GGGCTGTCGA AGCTGAAGTC GACCTACACC GACAAGCTGC CGCGCATGGT GAATCCGGCA
ACGGGTCGCG TGCACACGAA CTATGCGCAG GCCGTCGCGG TCACGGGCCG GCTCGCATCG
AACGATCCCA ATCTTCAGAA CATTCCGGTG CGCACGGCCG AAGGCCGGCG GATCCGCGAA
GCGTTCATCG CATCGCCCGG CCACCGGATC GTGTCGGCCG ACTATTCGCA GATCGAACTG
CGGATCATGG CCCACATCTC CGGCGACGCG TCGCTCTTGC GCGCGTTCGC GCAAGGCGAG
GACATCCACC GCGCAACTGC TGCCGAAGTG TTCGGCGTGA CGCCGCTGGA GGTCAACTCC
GACCAGCGCC GGATCGCGAA GGTCATCAAC TTCGGGCTCA TCTACGGGAT GAGCGCGTTC
GGCCTCGCGT CGAACCTCGG CATCACGCGC GATGCGGCGA AGCTCTATAT CGACCGCTAC
TTCACGCGCT ACCCGGGCGT GGCGCAGTAC ATGGAAGACA CGCGCACGGC GGCGAAGGAC
AAGGGCTACG TCGAAACCGT TTTCGGCCGT CGCCTGTGGC TGCCGGAGAT CAACGGCGGC
AACGGCCCGC GCCGTCAGGC TGCCGAGCGC GCGGCCATCA ATGCACCGAT GCAGGGCACG
GCGGCTGACC TGATCAAGCT CTCGATGATC GCGGTGGACG ACTGGCTCAC GCGCGACCAG
CTCGCGTCGC GAATGATCAT GCAGGTGCAC GATGAACTGG TGCTCGAGGT GCCCGACGAC
GAACTGTCGC TCGTGCGCGA GAAACTACCG GAAATGATGT GCGGTGTGGC GAAGCTGAAG
GTGCCGCTGG TCGCCGAAGT GGGCGCCGGC GCGAACTGGG AAGAGGCACA CTGA
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| Protein sequence | MPEERNLEGK TLLLVDGSSY LYRAYHAMPD LRGPGGEPTG ALYGIINMLR RMRKEVSAEY
SACVFDAKGK TFRDDLYADY KANRPSMPPD LALQVEPIHG AVRALGWPLL MVEGVEADDV
IGTLAREAER HGMNVIVSTG DKDLAQLVSD RVTLVNTMTN ETLDRDGVIA KFGVPPERII
DYLALIGDTV DNVPGVEKCG PKTAVKWLSQ YDSLDGVIEH AGEIKGVVGD NLRRALDFLP
LGRTLVTVET ACDLAPHLES IEASLKTDGE ARHLLRDIFA RYGFKTWLRE VESAPAEGGG
ADAPEGDPAP VIAADIVREY DTIQTWAQFD AWFAKIDAAA LTAFDTETTA LDPMTARLVG
LSFSIEPGKA AYLPVAHRGP DLPEQLPIDD VLARLRPWLE SADRKKVGQH LKYDAQVLAN
YGIALNGIEH DTLLESYVLE SHRTHDMDSL ALRHLGVKTI KYEDVAGKGA KQIGFDEVAL
EQAAAYAAED ADITLQLHQA LYPQVAREAG LERVYRDIEM PVSLVLRKME RTGVLIDDAL
LQAQSTEIAT RLIELEGQAY ELAGGEFNLG SPKQIGQIFF EKLQLPVVKK TPSGAPSTDE
EVLQKLAEDY PLPKLLLEHR GLSKLKSTYT DKLPRMVNPA TGRVHTNYAQ AVAVTGRLAS
NDPNLQNIPV RTAEGRRIRE AFIASPGHRI VSADYSQIEL RIMAHISGDA SLLRAFAQGE
DIHRATAAEV FGVTPLEVNS DQRRIAKVIN FGLIYGMSAF GLASNLGITR DAAKLYIDRY
FTRYPGVAQY MEDTRTAAKD KGYVETVFGR RLWLPEINGG NGPRRQAAER AAINAPMQGT
AADLIKLSMI AVDDWLTRDQ LASRMIMQVH DELVLEVPDD ELSLVREKLP EMMCGVAKLK
VPLVAEVGAG ANWEEAH
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