| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3079 |
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| Symbol | |
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| ID | 4310771 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | - |
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| Start bp | 3398963 |
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| End bp | 3400915 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638150919 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_774969 |
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| Protein GI | 115353130 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGAACA GCCTTTTCCG AGTATATCGC GCGGTCGCGC TCACGCTTTC CGCCGCCGCG
CTCGTCGCGG GCACGGCCGC GTGCGCCGCA CCGGGCGACG ACACGCTCGC CGGGGATGAC
CAGATCTTCG TGCAGCTTCG CGAAGCCGCG CGCCGCAACG ACGCCGCGAA GGCCGCGCAG
CTCGCGTCGC TGATCCCGAA CTATCCGGTC CCGTCCTACG TCGAGTATTT CCAGATCAAG
CCGCAGCTGT TCGATTCGAC GGGCCGCGCA CGCGTCGACG CGCCCGACGC ACCCGTGCAG
TCGTTCCTGC AGCGCTACGA CGGACAGGCG ATCGCCGACC GCATGCGCAA CGACTACCTG
CTCGTGCTCG GCGCGCGCCA CGACTGGCGC AACTTCGACG ACCAGTACAA GCGCTTCGTG
CTCGACGACG ACACGCAGGT CAAGTGCTAC GCGCTCGAAT CGCGCGCGGC GCGCGGCGAG
AACGTCGCCG ACGCGGCACG TGCGCTGCTC GTCGAGCCGA AATACTACGG CGACGCCTGT
GTCGACCTGA TTACGGCGCT GACGGTCAAC CATCAGTTCA CGAGCGACGA CGTGTGGCAG
CAGGCGCGCC TCGCGTACGA GCAGAACTAC ACGACGCTCG GCGGCAAGAT CGTCGACGCG
CTCGGCCCGC GCCCGGTCGA CTTCGACCAG GCGACCAGCG CGCCGCCGCT GTACCTCGCG
CGCGGCGTCG GCCCCGACGC GGCGTCGCAC CAGCTCGCGC TGATCGCGCT CGGCCGCATG
GCGCGCAACG ATCCGGACGC GGCGGCCGGG ATGCTGACCT CCGTCGCCGG CTCGCTCACT
AAGCCGGAAC AGGCGATCGC GTGGGGCGCG ATCGGCTACC AGGGCGCGAT CAAGCGCTCG
CCGCTCGCGT CGGTCTGGTA TGCGAAATCC GCGAACGCGC AGCTGTCGAA CCCGGGCTAC
GAATGGCGCA CGCGCGCCGC GCTGCTCGCC GGCAACTGGC CGATGGTGCG CTGGTCGATC
GAGCAGATGC CGCCGTCGCT GCGCGAGGAT CCGGCCTGGA TCTACTGGCA TGCGCGCGCG
CTCAAGCAAA GCGGCGACAC GCTGCAGGCG AACCAGGAAT TCGAGCAGGT CGCGGGCCAG
TACAACTTCT ACGGGCAGCT CGCCGGCGAA GAGCTCGGCC AGCGCACGAG CGTTCCGCCG
CGCACGAAGG TGAGCGACGC CGACATCGGC GCGATGAGCA AGATCCCGGG CTTCGCGCTC
GCGCAGCGCT TCTATGCGCT GAACCTGCGC CTCGAAGGCA ACCGCGAATG GAACTGGCCG
CTGCGCGGGA TGACCGATCG CCAACTGCTC GCGGCCGCCG AATACGGCAA GCGCGTCGAC
CTGCTCGACC GAACGGTCAA CACGGCCGAC CGCACGAAGG CCGAGCACGA CTTCACGCTG
CGCTACCCGT CGCCGTACCG CGACATCGTC GAGCGCTACG CGCAGTCGTC GGGCCTCGAC
ATCGAATGGG CGTACGGGCT GATCCGCCAG GAATCGCGCT TCATCACGAA CGCGCGTTCT
TCCGTTGGCG CGGGCGGGCT GATGCAGCTG ATGCCGGCCA CCGCGCAGCT CGTCGCGAAG
AAGCTCGGGA TGGGCACGAT CACGCGTGCG CAGATGCACG ACATCAATAC CAACATCCAG
CTCGGCACCT GGTATCTGGC GGACATCTAC AACAACTTCG ACAGCTCGCC GGTGCTGGCG
ACCGCCGGCT ACAACGCGGG CCCGGGCCGG CCGCGCCAGT GGCGCCAGGT GCTGACGCAG
CCGGTCGAAG GCGCGATCTT CGCGGAGACG ATTCCGTTCA ACGAGACGCG CGACTACGTG
AAGAACGTGC TGTCGAACAC CGTCTACTAC GCGGCGCTCT TCGAGGGCAA ACCGCAGTCG
TTGAAGAAAC GCCTGGGCAT GATCTCGCCC TGA
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| Protein sequence | MSNSLFRVYR AVALTLSAAA LVAGTAACAA PGDDTLAGDD QIFVQLREAA RRNDAAKAAQ
LASLIPNYPV PSYVEYFQIK PQLFDSTGRA RVDAPDAPVQ SFLQRYDGQA IADRMRNDYL
LVLGARHDWR NFDDQYKRFV LDDDTQVKCY ALESRAARGE NVADAARALL VEPKYYGDAC
VDLITALTVN HQFTSDDVWQ QARLAYEQNY TTLGGKIVDA LGPRPVDFDQ ATSAPPLYLA
RGVGPDAASH QLALIALGRM ARNDPDAAAG MLTSVAGSLT KPEQAIAWGA IGYQGAIKRS
PLASVWYAKS ANAQLSNPGY EWRTRAALLA GNWPMVRWSI EQMPPSLRED PAWIYWHARA
LKQSGDTLQA NQEFEQVAGQ YNFYGQLAGE ELGQRTSVPP RTKVSDADIG AMSKIPGFAL
AQRFYALNLR LEGNREWNWP LRGMTDRQLL AAAEYGKRVD LLDRTVNTAD RTKAEHDFTL
RYPSPYRDIV ERYAQSSGLD IEWAYGLIRQ ESRFITNARS SVGAGGLMQL MPATAQLVAK
KLGMGTITRA QMHDINTNIQ LGTWYLADIY NNFDSSPVLA TAGYNAGPGR PRQWRQVLTQ
PVEGAIFAET IPFNETRDYV KNVLSNTVYY AALFEGKPQS LKKRLGMISP
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