| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2577 |
|---|
| Symbol | |
|---|
| ID | 4308912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 2838866 |
|---|
| End bp | 2839909 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638150415 |
|---|
| Product | high-affinity nickel-transporter |
|---|
| Protein accession | YP_774467 |
|---|
| Protein GI | 115352628 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3376] High-affinity nickel permease |
|---|
| TIGRFAM ID | [TIGR00802] high-affinity nickel-transporter, HoxN/HupN/NixA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCGCG ATTCGTCCGA TGGAACCTTC CCCATGCCGC CCACCCCTGC CCTGCGCCGC
CTGCTGACGC TGTATGCGGG CCTGATCGTC GCCAACATCG CCGTCTGGCT GTGGGCGCTC
GCGGTGCTGC GCGACCATCC GCTGCTGCTC GGCACCGCCG CGATCGCGTA CGGGCTCGGG
CTGCGTCATG CGGTCGACGC CGATCACATC GCCGCGATCG ACGTCGCGAC GCGCAAGCTG
ATGCAGGACG GCCAGCGTCC GGTGACCGTC GGCCTGTTCT TCTCGCTCGG CCACTCGACG
ATCGTGATTG CCGCGACACT CGGCATCGCG CTGACCGCGT TCGCGCTGCG CGACCGTTTC
GACGCATTCC GCGAGATTGG CGGCACGATC GGCACGGCGG TGTCCGCGAC GTTCCTGCTC
GTGCTCGCAT GCATGAACCT GGTGATCCTG CGCGGCGTGT GGCGGCGCTA TCGCGGCGCG
CCCGACCATG CCCATGGCGG CGCGCACACG CATCGGGCGG GCGGCCTCGT GTCGCGGCTG
CTGCGCCCGC TGTTCCGGTT CGTGTCGAAA AGCTGGCACA TGTATCCGGT CGGCGTGCTG
TTCGGCCTCG GTTTCGATAC TGCAACCGAA ATCGCGCTGC TCGCGATCGC GGCCGCGCAG
GCAAGCCACG CGCTGCCGCT CTATACGGTC ATGCTGTTTC CCGCGCTGTT CGCGGCCGGC
ATGACGCTGA TCGACTCGAC CGACAACGTG CTGATGATTC ACGCGTACGG TTGGGCGATG
GACGACCCGC AGCGCAAGCT GCTCTATAAC GCGAGCATCA CGCTGCTGTC GGCGGTCGTC
GCGCTGGCCG TCGGCGGGAT CGAGGCCGCC GGCCTGCTCG CCGACAAACT GTCGCTGACG
GGCCCCGTAC GCGATGCGCT CGATACGCTC GGCGAACACT TCGGCGCGAT CGGCTATGGC
ATCGTCGCGC TGTTCCTCGT CGGCTGGATC GCGTCGATCC TCTGCCATCG CTGGCCGCGC
GCTGCCGATC CAACGGCGCG CTGA
|
|---|
| Protein sequence | MDRDSSDGTF PMPPTPALRR LLTLYAGLIV ANIAVWLWAL AVLRDHPLLL GTAAIAYGLG
LRHAVDADHI AAIDVATRKL MQDGQRPVTV GLFFSLGHST IVIAATLGIA LTAFALRDRF
DAFREIGGTI GTAVSATFLL VLACMNLVIL RGVWRRYRGA PDHAHGGAHT HRAGGLVSRL
LRPLFRFVSK SWHMYPVGVL FGLGFDTATE IALLAIAAAQ ASHALPLYTV MLFPALFAAG
MTLIDSTDNV LMIHAYGWAM DDPQRKLLYN ASITLLSAVV ALAVGGIEAA GLLADKLSLT
GPVRDALDTL GEHFGAIGYG IVALFLVGWI ASILCHRWPR AADPTAR
|
|---|
| |