| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1960 |
|---|
| Symbol | |
|---|
| ID | 4310198 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 2156955 |
|---|
| End bp | 2158694 |
|---|
| Gene Length | 1740 bp |
|---|
| Protein Length | 579 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638149777 |
|---|
| Product | putative oxidoreductase |
|---|
| Protein accession | YP_773850 |
|---|
| Protein GI | 115352011 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATACCC ATGTACTCGA ATACGACATC GTCGTGGTCG GCGGCGGCAC GGCCGGCCCG
ATGGCCGCGA TCAAGGCCAA GGAGCGCGAC CCGTCGCTGC GCGTGCTGCT GCTGGAGAAG
GCCAACGTGA AACGCAGCGG CGCGATCTCG ATGGGGATGG ACGGCCTGAA CAACGCGGTG
ATCCCCGGCC ATGCGACACC CGAGCAGTAC ACGCGCGAGA TCACGATTGC CAACGACGGG
ATCGTCGACC AGGAAGCCGT CTACGCGTAT GCGACGCACA GCTTCGCGAC GATCGAGCAG
CTCGACCGCT GGGGCGTGAA GTTCGAAAAG GACGGCACCG GCGACTACGC GGTGAAGAAG
GTCCACCACA TGGGTTCGTA CGTGCTGCCG ATGCCGGAAG GACACGACAT CAAGAAGGTG
CTGTACCGGC AGTTGAAGCG CGCGCGCATC GCGATCACGA ACCGGATCGT CGCGACGCGC
GTGCTGACCG ACGCGCAGGG CCGCGCGAGC GGCGTGCTCG GCTTCGACTG CCGCACCGCC
GATTTTCACG TGATCCGCGC GAAGGCCGTG ATCCTGTGCT GCGGCGCGGC CGGCCGTCTC
GGGCTGCCCG CGTCCGGCTA CCTGATGGGC ACGTACGAGA ACCCGACCAA CGCGGGCGAC
GGCTACGCGA TGGCGTACCA CGCAGGCGCG GCGCTCGCGA ACCTCGAGTG CTTCCAGATC
AACCCGCTGA TCAAGGACTA CAACGGCCCG GCCTGCGCGT ACGTGACGGG CCCGCTCGGC
GGCTTCACCG CGAACGGCAA GGGCGAGCGC TTCATCGAGT GCGACTACTG GAGCGGCCAG
ATGATGTGGG AGTTCTACCA GGAACTGCAA AGCGGCAACG GTCCGGTGTT CCTGAAGCTC
GACCACCTCG CCGAGGAAAC GATCCAGACC ATCGAGCAGA TCCTGCACAC GAACGAGCGG
CCGAGCCGCG GCCGCTTCCA TGCGGGACGC GGCACCGACT ACCGGCGCCA GATGGTCGAG
ATGCACATCT CCGAGATCGG TTTCTGCAGC GGCCACAGCG CGTCCGGCGT GTACGTGAAC
GCGCGCGCGG AAACGACCGT GCCGGGGCTC TACGCGGCCG GCGACATGGC GGCCGTCCCG
CACAACTACA TGCTCGGCGC GTTCACCTAC GGCTGGTTCG CCGGGCAGAA CGCCGCCGAC
TACGTGGCCG GCCGCGATCA CGCGGCGGTG GACGACGAAC AGGTCGCCGC CGAACGCACC
CGCGTGCTCG CGCCGCTCAC GCGCGAGCGC GGCCTCGCGC CGGCGCAGGT CGAATACAAG
CTGCGCCGCA TGGTGAACGA CTATCTTCAA CCACCGAAGG TGACGCGCAA GATGGAAATC
GGCTTGCAAC GTTTTGACGG AATTACAGAG GATATCGAAG AAATCAAGGC GAATCACCCG
CATGAACTGA TGCGCGCGGC CGAAGTGCGC GCGATTCGCG ACTGCGCCGA GATGGCCGCG
CGGGCGTCGC TGTTCCGCAC CGAGAGCCGC TGGGGACTGT ATCACCATCG CGTCGACTTC
CCGCATCGCA ACGACGCCGA ATGGTTCTGC CACACCTGGC TGCGCAAAGG CGTCGACGGC
ACGATGCGCA GCGAGAAGCG GCCGGTCGAA CCGTACGTCG TGCCGCTCGC CGACGACGAA
CGCAGCGCCT ACGCGCAGTT GCGCATCCGC GAACCGGCCG CACGCGCGGC CGCCCTTTGA
|
|---|
| Protein sequence | MNTHVLEYDI VVVGGGTAGP MAAIKAKERD PSLRVLLLEK ANVKRSGAIS MGMDGLNNAV
IPGHATPEQY TREITIANDG IVDQEAVYAY ATHSFATIEQ LDRWGVKFEK DGTGDYAVKK
VHHMGSYVLP MPEGHDIKKV LYRQLKRARI AITNRIVATR VLTDAQGRAS GVLGFDCRTA
DFHVIRAKAV ILCCGAAGRL GLPASGYLMG TYENPTNAGD GYAMAYHAGA ALANLECFQI
NPLIKDYNGP ACAYVTGPLG GFTANGKGER FIECDYWSGQ MMWEFYQELQ SGNGPVFLKL
DHLAEETIQT IEQILHTNER PSRGRFHAGR GTDYRRQMVE MHISEIGFCS GHSASGVYVN
ARAETTVPGL YAAGDMAAVP HNYMLGAFTY GWFAGQNAAD YVAGRDHAAV DDEQVAAERT
RVLAPLTRER GLAPAQVEYK LRRMVNDYLQ PPKVTRKMEI GLQRFDGITE DIEEIKANHP
HELMRAAEVR AIRDCAEMAA RASLFRTESR WGLYHHRVDF PHRNDAEWFC HTWLRKGVDG
TMRSEKRPVE PYVVPLADDE RSAYAQLRIR EPAARAAAL
|
|---|
| |