Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_1932 |
Symbol | |
ID | 4310936 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | + |
Start bp | 2126293 |
End bp | 2129850 |
Gene Length | 3558 bp |
Protein Length | 1185 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 638149749 |
Product | transcription-repair coupling factor |
Protein accession | YP_773822 |
Protein GI | 115351983 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATCGA GAAGCGGATT TTATAATAGG TCTTTCGTCT CGACCGGCGC GCCGCGCCGC GCCGTGCCCG CCACCCCTGC CGTCCCTATG CCAGACAACG CTTCCATCCC GTTCGCCTCG CCCGTCGCCC GCGTCAAACC GGGCCAGCGG TTCGCCTTCG ACGGCACGCA CGGCTCCGCC GACGCACTCG CCATCGCCCG CTATCTCGCC GAGAACCGCG CCGCGGTGCC GCTCCTCGCG GTGATCTGCG CGAACGCGGT CGACGCGCAG CGGCTGTCGC AGGAACTCCG CTACTTCTCG CCCGATGCGC GCGTGCGCCT GCTGCCGGAC TGGGAAACGC TGCCGTACGA CACGTTCTCG CCGCACCAGG ATCTCGTCTC CGAGCGGCTC GCGACGCTGC ACGACCTCGG CGAGGGCCGC TGCGACATCC TGCTGGTGCC CGCGACCACC GCGCTGTACC GGATGCCGCC CGCGTCGTTC ATGGCCGCGT ACACCTTCGC GTTCGCGCAG GGCGAGCGGC TCGACGAGGC GAAGCTGAAG GCGCAGCTCA CGCTGGCCGG CTACGAACAC GTGAGCCAGG TCGTGCGGCC CGGCGAATAC TGCGTGCGCG GCTCGCTGAT CGACCTGTAC CCGATGGGCT CGCCGCTGCC GTACCGGATC GACCTGTTCG ACGACCAGGT CGACTCGATC CGCGCGTTCG ATCCCGATAC GCAGCGCAGC CTCTACCCGG TTCGCGAAGT GCGCCTGTTG CCCGGCCGCG AGTTTCCGTT CGACGAAGCC GCGCGCACGG CCTTTCGCAG CCGCTGGCGC GAGACCTTCG AAGGCGACCC GAGCCGCGCG CCGATCTACA AGGACATCGG CAACGGCGTG CCGTCGGCCG GCATCGAGTA CTACCTGCCG CTGTTCTTCG ACGAGACGGC CACGCTGTTC CACTACCTGC CGCAGGACGC GCACCTCGTG TTCACCGGCG ATCTCGAGGC GTCGATCCGC CGCTTCACGG CCGATACGAA GCAGCGCCAC GCGTTCCTCT CGCACGACCG CGAGCGGCCG ATCCTCGAGC CGCAGCGCCT GTTCCTGTCC GACGAGGATT TCTTCGCGTT CGCGAAGCCG TTCGCGCGCG TCGTGCTGCC CGCGCAGCCG GCCGGCGGCT GGGCGACGGG CCTGCCCGAG CTCACGGTCG ATCGCCATGC CGACGATCCG CTCGCCGCGT TGCGCACGTT CGTCGAATCG TCGGGCAAGC GCGTGCTGCT GACGGTCGAA TCGGCCGGCC GCCGCGAAAC GATCCTGCAA CTGCTCGCCG AGCATCACCT GCGCCCCGCG TCGAACGACC ACTTCGCGGG CTGGCTCGAA AGCGATGCGC CGTTCGCGCT CGGTGTCGCG CCGCTCGCGA GCGGCTTCGC GGTGCCGGGC GAAGGCTACG CGATCGTCAC CGAAACCGAG CTGTACGGCG CGCTCGGCCG GCGCGCGGGC CGGCGCCGCC AGGAACAGGC AAGCAACGTC GACGCGATGG TGCGCGACCT GTCGGAGCTG AAGGTCGGCG ACCCGGTCGT CCATGCGCAG CACGGCATCG GCCGCTACAT GGGCCTCGTG TCGATGGATC TCGGCGAAGG CGAGACCGAA TTCCTGCACC TCGAATACGC GGGCGACAGC AAGCTCTACG TGCCGGTCGC CCAATTGCAC GTGATCTCGC GCTACAGCGG CGCCGATCCC GACAGCGCAC CGCTGCACGC GCTCGGCTCG GGCCAGTGGG AGCGCGCGAA GCGCAAGGCC GCGCAGCAGA TTCGCGACAC GGCGGCCGAG CTGCTGAACC TGTACGCGCG CCGCGCGGCC CGCGAAGGCC ATGCGTTCGC GCTCGATCCG CGCGACTACG TGAAGTTCGC GGAGAGCTTC GGCTTCGAGG AGACGCCCGA CCAGGCCGCG GCCATCGCGG CCGTGATCGG CGACATGACG AGCGGCAAGC CGATGGACCG CCTCGTGTGC GGCGACGTCG GCTTCGGCAA GACCGAGGTC GCGCTGCGCG CCGCGTTCAT CGCGGTGATG GGCGGCAAGC AGGTCGCGCT GCTGTCGCCG ACCACGCTGC TCGCCGAGCA GCACACGCAG ACCTTCGTCG ACCGCTTCGC GGACTGGCCG GTGCGCATCG TCGAGCTGTC GCGCTTCAAG ACCACGAAGG AAGTGAATGC GGCGATCGCG CAGATCAACG AAGGCACTGT CGACATCGTG ATCGGCACGC ACAAGCTGCT GTCGTCGGAC GTGCAGTTCA AGCGCCTCGG CCTCGTGATC ATCGACGAGG AACACCGCTT CGGCGTGCGC CAGAAGGAAG CGCTGAAGGC GCTGCGCGCG GAAGTCGACG TGCTGACGCT GACCGCCACG CCGATCCCGC GTACGCTCGG GATGGCGCTC GAGGGGCTGC GCGACTTCTC GGTGATCGCG ACCGCGCCGC AGAAGCGGCT CGCGATCAAG ACCTTCGTGC GCCGCGAGGA AGAAAGCGTG ATCCGCGAGG CGATGCTGCG CGAGCTGAAA CGCGGCGGCC AGGTGTACTT CCTGCACAAC GAGGTCGAGA CGATCGAGAA CCGCAGGGCG ATGCTCGAGG AACTCGTGCC CGAGGCGCGC ATCGTGATCG CGCACGGCCA GATGCACGAG CGCGAACTCG AACGCGTGAT GCGCGATTTC GTCGCGCAGC GCGCGAACGT GCTGCTGTGC ACGACCATCA TCGAGACCGG CATCGACGTG CCGAGCGCGA ACACGATCAT CATGCACCGC GCGGACAAGT TCGGCCTCGC GCAGCTTCAC CAGCTGCGCG GCCGCGTCGG CCGTTCGCAC CACCAGGCGT ATGCGTACCT GCTGGTCCAC GATCCGCAGT CGCTGACCAA GCAGGCGCAG CGCCGGCTCG AGGCGATCCA GCAGATGGAG GAGCTCGGTT CGGGCTTCTA TCTTGCGATG CACGACCTCG AGATCCGCGG CACCGGCGAG GTGCTCGGCG ACAAGCAGTC GGGCGAGATC CACGAGATCG GCTTCCAGCT GTATACCGAC ATGCTGAACG ACGCGGTGAA GGCGCTGAAG AACGGCAAGG AGCCCGACCT CACCGCACCG CTCGCCGCCA CGACGGAAAT CAACCTGCAT GCGCCCGCGA TCCTGCCGGC CGACTACTGC GCGGACGTGC AGGAGCGGCT GTCGCTGTAC AAGCGTCTCG CGAACTGCGA GCATGGCGAC GCGATCGACG GCATCCAGGA AGAGCTGATC GACCGCTTCG GCAAGCTGCC GCCGCAGGCG CACGCGCTCG TCGAGACGCA CCGGCTGCGG CTGGCCGCGA AGCCGCTCGG CATCGTCAAG ATCGACGCGA GCGAGGCCGC GATCGGGCTG CAGTTCGAGC CGAACCCGCC GATCGATCCG ATGCGCATCA TCGACATGGT GCAGAAGCAC CGGCACATCA AGCTCGCGGG CCAGGACAAG CTGCGCATCG AGACGCGCTC GCCCGATCTC GCGATCCGCG TGTCGACGAT CAAGGAAACG CTGCGCGCGC TGGCGCCGCG CGCCGACGCC GCGAGCGCGG CCCGCTGA
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Protein sequence | MKSRSGFYNR SFVSTGAPRR AVPATPAVPM PDNASIPFAS PVARVKPGQR FAFDGTHGSA DALAIARYLA ENRAAVPLLA VICANAVDAQ RLSQELRYFS PDARVRLLPD WETLPYDTFS PHQDLVSERL ATLHDLGEGR CDILLVPATT ALYRMPPASF MAAYTFAFAQ GERLDEAKLK AQLTLAGYEH VSQVVRPGEY CVRGSLIDLY PMGSPLPYRI DLFDDQVDSI RAFDPDTQRS LYPVREVRLL PGREFPFDEA ARTAFRSRWR ETFEGDPSRA PIYKDIGNGV PSAGIEYYLP LFFDETATLF HYLPQDAHLV FTGDLEASIR RFTADTKQRH AFLSHDRERP ILEPQRLFLS DEDFFAFAKP FARVVLPAQP AGGWATGLPE LTVDRHADDP LAALRTFVES SGKRVLLTVE SAGRRETILQ LLAEHHLRPA SNDHFAGWLE SDAPFALGVA PLASGFAVPG EGYAIVTETE LYGALGRRAG RRRQEQASNV DAMVRDLSEL KVGDPVVHAQ HGIGRYMGLV SMDLGEGETE FLHLEYAGDS KLYVPVAQLH VISRYSGADP DSAPLHALGS GQWERAKRKA AQQIRDTAAE LLNLYARRAA REGHAFALDP RDYVKFAESF GFEETPDQAA AIAAVIGDMT SGKPMDRLVC GDVGFGKTEV ALRAAFIAVM GGKQVALLSP TTLLAEQHTQ TFVDRFADWP VRIVELSRFK TTKEVNAAIA QINEGTVDIV IGTHKLLSSD VQFKRLGLVI IDEEHRFGVR QKEALKALRA EVDVLTLTAT PIPRTLGMAL EGLRDFSVIA TAPQKRLAIK TFVRREEESV IREAMLRELK RGGQVYFLHN EVETIENRRA MLEELVPEAR IVIAHGQMHE RELERVMRDF VAQRANVLLC TTIIETGIDV PSANTIIMHR ADKFGLAQLH QLRGRVGRSH HQAYAYLLVH DPQSLTKQAQ RRLEAIQQME ELGSGFYLAM HDLEIRGTGE VLGDKQSGEI HEIGFQLYTD MLNDAVKALK NGKEPDLTAP LAATTEINLH APAILPADYC ADVQERLSLY KRLANCEHGD AIDGIQEELI DRFGKLPPQA HALVETHRLR LAAKPLGIVK IDASEAAIGL QFEPNPPIDP MRIIDMVQKH RHIKLAGQDK LRIETRSPDL AIRVSTIKET LRALAPRADA ASAAR
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