| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1773 |
|---|
| Symbol | |
|---|
| ID | 4311111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 1960559 |
|---|
| End bp | 1961914 |
|---|
| Gene Length | 1356 bp |
|---|
| Protein Length | 451 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638149587 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_773663 |
|---|
| Protein GI | 115351824 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGCCG ACATCCGCCG GATCGTCGGT CTCGCGTGGC CGGTGCTCGT CGGCCAGCTC
GCGATCATCG CGTTCGGCGT GATCGACACG GCGATGGTCG GCCGCTACTC GGCCATCGAC
CTGGCCGCGC TCGGGCTCGG TTCGTCGATC TACGTGTCGA TCTACATCGG GATGACGGGC
ATCCTGTCCG CGCTGCAGCC GATCACCGGG CAGCTGTACG GCGCCCGGCG CTACGCCGAG
ATCGGCGAGG AAGTCCGCCA GGCGCTGTGG CTCGCGCTGA TGCTCGCGGT GCCCGGCTTC
CTGCTGCTGC ATTTTCCCGA ACCGCTGCTG CACATCGCCC ACGCGCCGCC CGCGCTGCAC
GAGCGCACCG TCGATTACCT GCGCATCCTG TCGTACGGGC TGCCTGCGAG CCTCGTGTTC
CGGATCTACA ACGCGCTGAC CAATGCGGCC GGCAAGCCGC GCCTCGCGAT GATCCTGCAG
ATCGGCGCGC TGCTGCTCAA ATTTCCGCTC AACGTGTGGT TCATCTTCGG CGGGTTCGGC
ATGCCGGCGC TCGGCGGCCC CGGTTGCGGG CTCGCGAGCA CGCTGATCAA CTGGGCGCTC
GCGCTGATCG GCTTCACGCT CCTCGCGAAG CTCGACGTGT TCACGCCGCT CGCGATCTTC
TCGCGCTTTT GCTGGCCCGT CTGGTGGCGC CAGAAGGCGA TTCTCAAGCT CGGCGTGCCG
ATGGGCCTGT CGTACCTGAT CGAGGTCACG TCGTTCACGT GCATGGCGCT CTTCATCGCG
CAGTTCGGCA CGACGACGCT CGCCGGCCAC CAGATCGCCG GCAACATCAG CGCGGTGCTG
TACATGACGC CGCTGTCGAT CGGCGTCGCG GCATCGACGC TCGTCGCGCG CGCGCTCGGT
GCCGGCCGTC CGGACGAGGC GCGCCTGCTC GGCCGGCACA GCGTGATGCT CGCGTGCGGG
ATCGCGGCCG CGTATGGCGT GCTGGTGTTC ACGCTGCGTC CGCTGATCGT CAGCGGCTAC
ACGCCGAACC CGGCCGTGGT GGCCGCGGCG CTGCCGCTGG TCGCGATCGT CACCTGCTAT
CACTTCTTCG ATGCGCTGCA GATCACGTCG GCATTCGTGC TGCGCGCGTA CAAGGTTGCC
GTCGTGCCGA CCGTGATCTA CGCGGTCGCG CTGTGGGGCG TCGGGCTCGG CGGTGGCTAC
GTGCTCGGCT TCGACATCGG CGGCATCGCG CCGGCATGGC TGACCGGCGC GCGCGGCTTC
TGGTTCGCGA ACACGATCAG CCTGATGCTC GCCGGTGCAG GACTCGCCCT CTACCTGCGC
CGCGTCAGCC GCGCGGCGCT GTCCGTCGGC GCCTGA
|
|---|
| Protein sequence | MFADIRRIVG LAWPVLVGQL AIIAFGVIDT AMVGRYSAID LAALGLGSSI YVSIYIGMTG
ILSALQPITG QLYGARRYAE IGEEVRQALW LALMLAVPGF LLLHFPEPLL HIAHAPPALH
ERTVDYLRIL SYGLPASLVF RIYNALTNAA GKPRLAMILQ IGALLLKFPL NVWFIFGGFG
MPALGGPGCG LASTLINWAL ALIGFTLLAK LDVFTPLAIF SRFCWPVWWR QKAILKLGVP
MGLSYLIEVT SFTCMALFIA QFGTTTLAGH QIAGNISAVL YMTPLSIGVA ASTLVARALG
AGRPDEARLL GRHSVMLACG IAAAYGVLVF TLRPLIVSGY TPNPAVVAAA LPLVAIVTCY
HFFDALQITS AFVLRAYKVA VVPTVIYAVA LWGVGLGGGY VLGFDIGGIA PAWLTGARGF
WFANTISLML AGAGLALYLR RVSRAALSVG A
|
|---|
| |