Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_1745 |
Symbol | hfq |
ID | 4309827 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | - |
Start bp | 1930297 |
End bp | 1930539 |
Gene Length | 243 bp |
Protein Length | 80 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 638149559 |
Product | RNA-binding protein Hfq |
Protein accession | YP_773635 |
Protein GI | 115351796 |
COG category | [R] General function prediction only |
COG ID | [COG1923] Uncharacterized host factor I protein |
TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
|
Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCAACA AAGGGCAATT GTTACAAGAC CCGTTTTTGA ACGCACTGCG CAAAGAGCAC GTTCCCGTTT CGATCTATCT CGTCAACGGC ATCAAGCTCC AAGGGAACAT CGAATCGTTC GACCAGTACG TCGTGTTGCT CCGTAATACG GTGACCCAGA TGGTCTACAA GCACGCCATC TCGACGGTCG TGCCGGCGCG CCCGGTGAAT TTCCACCCGG ACGCGGAAGC GACCACGTCC TAA
|
Protein sequence | MSNKGQLLQD PFLNALRKEH VPVSIYLVNG IKLQGNIESF DQYVVLLRNT VTQMVYKHAI STVVPARPVN FHPDAEATTS
|
| |