| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1069 |
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| Symbol | |
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| ID | 4311250 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | - |
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| Start bp | 1162003 |
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| End bp | 1163835 |
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| Gene Length | 1833 bp |
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| Protein Length | 610 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 638148877 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_772962 |
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| Protein GI | 115351123 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAGCCA ACAGGAAACA GACGCCACGC AAGGGCTCCT GGCGCAATGC CTTGCATACG
CTGCGCCGCT TCGCCTGGTC GGGCGGCGCG CTGATGCCTG CGCGCGCCGG CGCGCCGCGC
CGCGACGACA CCGTGCGCAA CTGGCTGGAA CAGACGGTCG GCACGGTGGA TTTCCTCGCC
CATGTCGACC GCGAGCTGCG CTTTCTGTAC GTATCCGACG CGAGCCTGCG TTTCATCGGT
TATCACCGCG ACTACCTGCA CACGCTGACG CTGCGCGACC TGATCGCGGA ACAGGATACC
GCGACGCTCG AAGGCCTGCT CGCACGTGCC GCGCGTTCCG GCCAGGTCGA GAAAGCGACG
ATCTGCATCG TCAAGTCGCT CACCTACCCG CTCGACGTCG AGATCCGCGC GTTCAAGAGC
CGTCACCACG GCGTCGACGG CTTCGCGATC GCGGCGTTCG ACGTGACGGC CTGGCGTGCG
CTCGAAGCCC GCCTGACGTA CGAGATGCAC CACGATCCGA TGACGGGGCT CGACAACCTG
TCCGCGCTCG TGCCCGCGCT GATGCGCGCG CAGCAGGCGG CCGACGAGAG CGGCACATGC
GCGGCGCTGC TGCTGCTCGA CCTCGACGAC TACCAGCGCA TCAACCGCGC GCTCGGCTAC
GACGCCGGCG ACACGCTGCT GCGCGACACC GCGCAGCGGC TGCGGGCGCT CGTCGCACCG
GGCGAGCAGC TCGCGCGCGT TGCGAGCGAC AAGTTCGCGG TGGTGTTGAC CGCGCCGAAC
CGCGCGCGCG CGAGCGACGC CGCGGACGCG CTCGCGCGCC GGCTGCAGGC CGCGGTGCGC
GAACCTTACG TGTTTCAGGG GCAGACCGTG CACTTGTCCG CGAGCATCGG CATCGCGCTA
TACCCGGACG AACGCGCGGC GCCCCATCGC GCGCAGCACC ACAGCCCGCT GCTGCGCCGC
GCCGACCACG CGCTCGCGCA GGCGAAGGCG TCGGGCGGCA ATGCGCTCGC GTTTCACGAG
CCGGTCGACG ACCCGGCCGA CGCGGAGCGG CTCAAGCTCG AGGCCGACCT GTACGACGGC
GTGCGCAACG GCGAGTTCTC GCTCCACTTC CAGCCGATCA CGCGCAGCCA GTCGGGCGCG
GTGGACGGCG TCGAGGCGCT GATCCGCTGG CGACATCCGG TGCACGGCCT CGTGCCGCCG
GCCACCTTCA TTCCGCTCGC CGAGTCGATC GGCCTGATCA ACTATCTCGG CAACTGGGTG
CTCAAGGCCG CGTGCATGCA ACTCGTCGCG TGGGACCGCC AGGGGCTCGC GCTGCAGTAT
GTGGCGGTCA ACGTGTCGCC GCAGCAGTTT CGCGACCCGC GCTTCACGCA GAGCGTGCGC
GAGGCGATCG CGCTGACGGG CATCGACCCG CGCCGCATCG TGCTCGAAAT TACCGAAAGC
CTGCTGATGC ACGATCCCGC GCAGGCGAAG ATGCTGCTCG AGGAGCTGAC CGAGCTCGGC
ATCCGCTTCG CGATCGACGA TTTCGGCACC GGCTATTCGA GCCTCGCGTA CCTGCAGCGC
TTCCCGCTCG CGAAGCTGAA GATCGACCGC AGCTTCGTCG AGAACCTGCT GACGTCGCGC
AACGATCGCG CGATCGTGTC GGCGGTGGTC GGCCTCGCGC AGACGCTCGA TCTCGAGCTC
GTCGCGGAAG GCGTCGAGAC CGAGGCGCAG CGCGAACTGC TGACCGAAAT GGGCTGCAAC
CACATCCAGG GCTGGCTCGT GTGCCAGGCG CTGCCGTCCG AGGAGCTCGC GCGGCGCTTC
GAGGCGCAGC AATTGCGCCT GCACGCCGCC TGA
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| Protein sequence | MEANRKQTPR KGSWRNALHT LRRFAWSGGA LMPARAGAPR RDDTVRNWLE QTVGTVDFLA
HVDRELRFLY VSDASLRFIG YHRDYLHTLT LRDLIAEQDT ATLEGLLARA ARSGQVEKAT
ICIVKSLTYP LDVEIRAFKS RHHGVDGFAI AAFDVTAWRA LEARLTYEMH HDPMTGLDNL
SALVPALMRA QQAADESGTC AALLLLDLDD YQRINRALGY DAGDTLLRDT AQRLRALVAP
GEQLARVASD KFAVVLTAPN RARASDAADA LARRLQAAVR EPYVFQGQTV HLSASIGIAL
YPDERAAPHR AQHHSPLLRR ADHALAQAKA SGGNALAFHE PVDDPADAER LKLEADLYDG
VRNGEFSLHF QPITRSQSGA VDGVEALIRW RHPVHGLVPP ATFIPLAESI GLINYLGNWV
LKAACMQLVA WDRQGLALQY VAVNVSPQQF RDPRFTQSVR EAIALTGIDP RRIVLEITES
LLMHDPAQAK MLLEELTELG IRFAIDDFGT GYSSLAYLQR FPLAKLKIDR SFVENLLTSR
NDRAIVSAVV GLAQTLDLEL VAEGVETEAQ RELLTEMGCN HIQGWLVCQA LPSEELARRF
EAQQLRLHAA
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