| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6645 |
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| Symbol | |
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| ID | 6181791 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010553 |
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| Strand | + |
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| Start bp | 138870 |
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| End bp | 141572 |
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| Gene Length | 2703 bp |
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| Protein Length | 900 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641685404 |
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| Product | outermembrane fimbrial usher protein |
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| Protein accession | YP_001812309 |
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| Protein GI | 172064659 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000000201733 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATTCCAT TCGATCTCAA GAAGACCGTT GTCGTGTGCC TGAGTGCGCT GTGCGTAATG
GACGCGATGT CCGCCGCGCA TGCCGCATCC TCGGTGCCGC CGGGATTCGA GGACATCATG
GCGGGGCACG ACGAGCGCAT CAACGTCAAT TTCCTCGGCC AGCCGCTCGG GCTGTTCCGC
GTGTTCGTGA CACCCGAAAC GGTTCGTTTC GAGGAGCCGG CGCGGCTGAT GCAGGCACTG
CATTCGCGGA TGAACCCGGC GGCGGACGCA ACGGGGATCG GCGACGCGCT GGCGAAGCCG
ATGGCGCGCA ACGGCAACCT GGCGTGCGCG GGCCAGACGG GCGTGAACGG CTGCGGGTAT
GTCGAGACCG ACGGCGCCGC GCTGATCTAC GACGAAAGCG ACGGCAACAT CGAACTGTTC
CTGTCGCGCG ACTGGGTGAG CACCGAGGAG CGCAACGAGC GGTTTCGCGA GCCGTCGCCG
ATGACGGAGA ACGCGCTGAT TCATCAGCAG ACGCTGAACC TGTCAGGCGG ACGCGGATAC
GAGAGCCTGT CCGTTTCGGG CACAGGGGCG CTCGGCGTCA CGCCGAAGAG TTTCATTGGC
GGCAACTGGA GCTTCACCCA TACGGGCTAT TCGCGGGGCG CCGACAGCCG CCTCCAGCTT
CAGGATTTCT ACTATCGGCA CGACCTCAGC AGCGAGCATT ATGCGCAGGC CGGCCGGATG
GACAACCGCA ATCTCGCGAG CACGCTCGGC GGCAACTTCG GGTTCACGAT GCTGCCGGTC
GGCACGCTCG ACGGCGTGCG TGTCGGCACG ACGCTCGCGT ACGTCAACCC GGAAGTCGCG
CAGCAGGGCA CGCCCGTCAC GCTGCTGCTG CCGCGCGATT CGCGCATCGA TGCATACCGC
GGGCAGGAGC TGCTCGGCAC GTTCTATCTG AAGGCCGGCG TCAATGCGCT CGACACGTCG
CGCTTTCCGG AAGGCACGTA TCCGCTCACG CTGCGGGTGT TCGAGAACGG CGTGCAGGTG
CGCACGCAGA CGTCGCCGTT CACGAAGACG GGCGGCGGCG CCGATGCGCG CACGCGGCAA
TGGTTCGCGC AGGCGGGGCG CCCGTCCGAT CGGGGCGCGC CGGACGGAAT GGCCGCCGCC
GCGGGCGTGC GCATTCCTCT GTTGCGCGAC ATGGCGCTGA CGAGCGGCAT CGCGAGCGTC
GGCCGGCACG TGTACAACGA AACGGCGCTC GAGTGGCGTC ATGCGTTTGC GCTGGGCGTG
CTGTCCGCCG GCGGCTCGTT TTTCACCGGG AACGACGGGT CGCGCGGTAA CACGCAGCAG
ATTTCGTTCG CCGACGGCGT GTCGTGGAGC GTCTATCGCT ACCAGATGCG CGGCGCCGCG
TGCAACGGGC CGGCCGCGCC GTATCGCGAC ATCGGCTGCT ACGACATGCT GAACGCGACC
GTGTCGTTTC CGCTCGGCGA CTGGTCGGCG ATGCTTGGCT ACACGTACAA CAAGAGCGTC
GGGCGAACGC AAAGCTGGCA GCCCGACACG CTCGATCGTC CGTGGGCTAC GCCGGTCGTC
CGCGACGGGG ACCAGGTGTC GCGCGCGCTC CAGGCGTCGC TGTCGCGGTC GGTCTCATGG
CGCAAGGTCA GCGCGAACCT GCGCGTCGGC GCGTACGCGA ATCGCAACAG CGGCGTGCGC
AGCGAGTACG GCGGGTACGT CGGCGTAACG CTGTCGATGG CGCAGCCCGC GACGCAGCCG
GGGCGTGTTT CCACGTACAC GTCGGCGGGC GCCGACGTGC GCACGGACCG CACCGGCACG
ACGGCCAACT ACACGCTCGA CCGCAACTGG AACTGGCAGG GCGATTCGTA CCGCGAGGTC
GCGCTCGGCC TGTCCGGGTA TGGCGCCGAC AGCCTGACCG GCACGCTGCA GGGGCGCTGG
AAGGGCCGTT ACGGCGACGT CGCCGGTGCG GTCGCGAACA GCTACAGCCG CGACAGCGGC
GGCAACAATC CGTCGGTCAC GGCGAGCTAT TCGTCGTCGT TCGCGGTGGC GCGGCAAGGC
GTGTTCCTCG GCGCTTCCGC ATCGCAGTCG GATCCGCTCG CGGGGTTCGC CGTGCGGGTC
AGGAAGCGCG ACGATGCGTC CGGCATGGCG GCCGAAGTGC ACAGCGATTC GAGTGCGCGG
ATCAAGGTGG GCTTCGGACA ACGCGCGTTG CTGCCGGTGT CGGCCTTCAC GCCCGTGACG
ACCGAAGTGA ACGACGCCGG CGCACAGGCG GCGGCCGGCG CAACCAGCGT GACCGAGGGG
CTCGGCAAGC GCACGTTGTT CATGGTGCCG GGGCAGCTCG CGCTACGCGA TGTCGAGGCG
AAGGTGACCT ACACGTATGT CGGCCAGGCC TTCTCGAACA ACGGCATGCC GCTGTCGGAC
AGTGTGATCC TCAACGGCGC GATGCCGATG ATCGACAGCC ACGGTGGCTT CATTGCGGAA
CTCGATCATA AGGAAGACGA AATCTTCGTC GTGGATGGTC CGACGCTGAT GCGATGCCCG
CTGCACGTGA AGCGCCAGCA GGACGTGCTG ATGATGGTCG GCAAGGTTCG GTGCGAAGTA
GCGGGGCCGG ACGTGCTGCC CGAGGCGCTG CGCAAGCAGG CCGACGTGCG CAAGCTGCTC
GAGCATCGTT ACGTGATGTC GATGCGGGAG CGCGCGACGG GCATGACCGA TTCGACGCAG
TAA
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| Protein sequence | MIPFDLKKTV VVCLSALCVM DAMSAAHAAS SVPPGFEDIM AGHDERINVN FLGQPLGLFR
VFVTPETVRF EEPARLMQAL HSRMNPAADA TGIGDALAKP MARNGNLACA GQTGVNGCGY
VETDGAALIY DESDGNIELF LSRDWVSTEE RNERFREPSP MTENALIHQQ TLNLSGGRGY
ESLSVSGTGA LGVTPKSFIG GNWSFTHTGY SRGADSRLQL QDFYYRHDLS SEHYAQAGRM
DNRNLASTLG GNFGFTMLPV GTLDGVRVGT TLAYVNPEVA QQGTPVTLLL PRDSRIDAYR
GQELLGTFYL KAGVNALDTS RFPEGTYPLT LRVFENGVQV RTQTSPFTKT GGGADARTRQ
WFAQAGRPSD RGAPDGMAAA AGVRIPLLRD MALTSGIASV GRHVYNETAL EWRHAFALGV
LSAGGSFFTG NDGSRGNTQQ ISFADGVSWS VYRYQMRGAA CNGPAAPYRD IGCYDMLNAT
VSFPLGDWSA MLGYTYNKSV GRTQSWQPDT LDRPWATPVV RDGDQVSRAL QASLSRSVSW
RKVSANLRVG AYANRNSGVR SEYGGYVGVT LSMAQPATQP GRVSTYTSAG ADVRTDRTGT
TANYTLDRNW NWQGDSYREV ALGLSGYGAD SLTGTLQGRW KGRYGDVAGA VANSYSRDSG
GNNPSVTASY SSSFAVARQG VFLGASASQS DPLAGFAVRV RKRDDASGMA AEVHSDSSAR
IKVGFGQRAL LPVSAFTPVT TEVNDAGAQA AAGATSVTEG LGKRTLFMVP GQLALRDVEA
KVTYTYVGQA FSNNGMPLSD SVILNGAMPM IDSHGGFIAE LDHKEDEIFV VDGPTLMRCP
LHVKRQQDVL MMVGKVRCEV AGPDVLPEAL RKQADVRKLL EHRYVMSMRE RATGMTDSTQ
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