Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_6075 |
Symbol | |
ID | 6182026 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010557 |
Strand | - |
Start bp | 659578 |
End bp | 661002 |
Gene Length | 1425 bp |
Protein Length | 474 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641689205 |
Product | HlyD family type I secretion membrane fusion protein |
Protein accession | YP_001816064 |
Protein GI | 172065352 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0374496 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGCTGC TGGCTGAACC CGACGGCGCC GGCGCGCCGA CGACGCACCG CATCGCCGCG CTCAACGCGC TGCGCGCGCG CATCGGCGCC GCGCTGAAGC CGCGCGCCGA CGATACCGCG TTCATGCGCG AACGCTGCGC GGCCGCGATG GAGGGGCCGC GCTACTTCAC TCACTGGATC CTGTGGGCGA CGCTCGCGTT CATCGTCATC GCGCTCCTGT GGGCCGCGTT CGCCGAAGTC GACGAAGTCA CCGTCGGGGA AGGCAAGGTG ATTCCGTCCA GCCGCGTGCA GGTGGTGCAG AACCTGGAGG GCGGGATCGT CTCCGAGATC ATGGTGCGCG TCGGCCAGGT CGTCCAGAAA GGCCAGCCGC TGATGCGCAT CGACGATACG CGGTTCACGT CGTCGTACAA GGAAGGACAG GCGAAGGATG CCGCACTCCT CGCCCGCATC GCGCGGCTGA GCGCCGAAGC GAACGGCGCC GCGTTCGTCG TGCCGGCCGC CCTGGCACGC GCGAACCCGG GCCTGCTGGA CGAGGAACGC TCGCTGTTCG AGTCGCGTCA GCGCGAATTG CAGGCCAATC TCGACGTGCT CAGGCAACAG GCCGAACAGC ACCGGCAGGA GCTCGCGGAA AAGCGCTCGC GCGAGGGGCA GTTGCAACAC AGCTACGCGC TCGTCGCGAA GGAACTGGCG TTGACGAGCC CGCTCGTCGA AAAAGGCGCG GTATCGGACG TCGAGGTGCT GCGGCTCGAG CGGCAGGCGA CCGACATGAA GGGCGACCTC GATGCGACGC GGCTCGCGAT GCCGCGGCTG GAAGCCGCCT ATCGCGAGGC ACGCCAGAAA ATCGATGAAA CGACCGCGCA TTTCCGTGCC GACGCGATGA AGGAACTGAA TCTCGCGCGC GCCGATCAAT CGGCGCTGAG TGCGGCCAAC GTCGCGCTCG AGGATCGCGT CACGCGCACG CTGGTGCGCG CCCCGCTGAA AGGGATGATC AAGCAGATCA AGATCAACAC CGTGGGCGGC GTGATCCAGC CGGGGATGGA CCTGCTGGAA ATCGTGCCGC TCGACGACAC CCTGTTGATC GAGGCACGTG TGCGGCCGGC GGACATCGCG TTCCTGCATC CGGGGCAGGA CGCGACGGTC AAGCTGTCCG CGTACGACTT CTCGATCTAT GGCGGCTTTC CCGCCGTCGT CGAGGACATC AGCGCCGACA CGATCGTGCC GGACCGCCCC GGCGAGAAAC CGGACAGCTA TTACCGCGTA CTGGTGCGCA CCCGGCAAAA CAAGCCGAGC GGCCGGAGCC AGCCGGTGGC GATCGTGCCG GGGATGATCG CGACCGTCGA CATCCGCACC GGGCGCCGTA CCGTATTGCA TTACCTGCTC AAGCCCGTCA TCAAGACCAA GGAAATGGCG TTGCGCGAGC GCTGA
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Protein sequence | MSLLAEPDGA GAPTTHRIAA LNALRARIGA ALKPRADDTA FMRERCAAAM EGPRYFTHWI LWATLAFIVI ALLWAAFAEV DEVTVGEGKV IPSSRVQVVQ NLEGGIVSEI MVRVGQVVQK GQPLMRIDDT RFTSSYKEGQ AKDAALLARI ARLSAEANGA AFVVPAALAR ANPGLLDEER SLFESRQREL QANLDVLRQQ AEQHRQELAE KRSREGQLQH SYALVAKELA LTSPLVEKGA VSDVEVLRLE RQATDMKGDL DATRLAMPRL EAAYREARQK IDETTAHFRA DAMKELNLAR ADQSALSAAN VALEDRVTRT LVRAPLKGMI KQIKINTVGG VIQPGMDLLE IVPLDDTLLI EARVRPADIA FLHPGQDATV KLSAYDFSIY GGFPAVVEDI SADTIVPDRP GEKPDSYYRV LVRTRQNKPS GRSQPVAIVP GMIATVDIRT GRRTVLHYLL KPVIKTKEMA LRER
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