| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5892 |
|---|
| Symbol | |
|---|
| ID | 6182475 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 428865 |
|---|
| End bp | 430730 |
|---|
| Gene Length | 1866 bp |
|---|
| Protein Length | 621 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641689023 |
|---|
| Product | RpoD family RNA polymerase sigma factor |
|---|
| Protein accession | YP_001815882 |
|---|
| Protein GI | 172065170 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGCGC GGCACGCGGC GGTGCCCACG GCCGGCCGCG ACGACGGCGC AGCGCCGTAC
GCCGTCGCGC ACCTCCACGC GCTGATCGCG ACCGGCCTGT CGCGCGGCTT CGTCACGCAC
GGCGACATCA TCGACGGGCT GCCCGACGAT GATGCGAATG ACAGCGGCAT CGATGCGGTG
GCAGCGGTGC TCGACGAACT CGGCATCGCG GTGTGCGACA GCGCCGATAC CGCGAGCGGC
TGGACGCTCG AGCGCTACTT CCGGCCCGCG CCGCCCGCGC GCGCATGGGC CGACGGCGCC
GGCACGCTCG CCGCGGCCGA CCTGCTCGCG CCGCGCACGA CCGATCCGGT CCGGCTGTAC
CTGCGCGAGA TGGGCACGAC GCCGCTTCTC ACGCGCGACG AGGAATTCGC GTACGCGCGA
CGGATCGAGC GCGGCCGCGC CGCGTCGGCC GCGGTGCTGT GCGGCGACCC CGATGCACTC
GACGCGCTCG TGTCGATTCG CGTCGAGATC GCGCAATGCC GGACCGCCGC GTCGACCTAT
GTGATCTTTC TCGACGACGG CCCGCGCGAC GACATGACGG TCGATCACGC CGAGGTGCGC
ACGTCGGCCA CCCCTGCCGG CGAACCCGCG CGCGACGACG ATACGGAGGC CGATACGCAG
ACCGAGGATT CGGCCTGGCG CGGCGCGGTA GTGGCGCGGC TCGCACGCAT CGATGAACTC
GCGCACGGCA TGCGCGCCGC GCTGGCGTCC GGCGGCAGCG CTTGCGCCGC GTATCGCTCG
CACGTACGTG ACGCCGCTGC ACTGCTCCGC ACATTGGGCC TGTCCGCCCG CGCGCTCGAA
CGGATGAGCG AGCCGTTGCG CGCCCGCGCG CGCCGGCACC GTGCGTTGCG GGCCCGGCTG
GAGCGGATGC TGGCCGACGT CGGCGTCCCG CGGTCGTTCG CGCACGCGGC CGACGACGAT
CACGCCGGCT GGCTGGCATC ATGCATCGCC GCGCACCCGG CCTGCGCGCC GACGCTGAAA
AGACGGGCGG CCGAGTTCAT CGATGCACGC GACGCGATCG TGCGCGCGGC CCCCGCATCG
GAACTGCCGC CCGGCGCGAC CGCGTCGCTC GATGCACGGC TCGGCGCGAT CGAACGCGCG
ATGCAGCCGG CGAGGACGGG TTTGTTCGAT GCGAACCTGC GGCTCGTCGT GTCGATCGCG
AAGCGCTATC CGGATCGCGG CCTGCCGTTC GCCGACCTGA TCCAGGAAGG CAATATCGGA
CTGTTGAAGG CCATCGAGCG CTACGACTAC CGGCGCGGCT TCCGGTTCTC GACTTACGCG
ACCTGGTGGA TCCGGCAGGC GATCACGCAT GCGCTCGCCG ACCTCGGCCG CACGATCCGC
GTGCCGACGC ATACGGTCGA CGCGCTGAAC AAGCTGTCGC GACTCGCGCG CGAGCATCGG
CAGCGCGCGG GCACCGCGGC GACGCCGGCC GAACTGGCCG TCCACATGGG CGAGCCGGTC
GACAAGGTGC GTGACCTGAT GGCCATCGTG AAGGAACCGG TGTCGGCCGA CGTGCCGGTC
TCGCCGGAAG GCGACATGAC GTTCGCCGAC GTCGCGCCGG ACACGACGAC GCCTTCTCCC
GAAGACGCGG CCGGCGCCAC GCAGTTGCGC CGCACGATCG CTGCGGTGAT CGATCGGCTG
CCGCCGCGCG AGGCGATGGT CCTCAAGCTG CGCTACGGTT TGCACACGGA CGAAGGCTGC
TCGCTGCGCG ACATTGGCCG CCAGCTGAAC CTGTCCGCCG AACGCGTGCG GCAGATCGAG
GCCTCGGCGC TCGCCCGCCT TCGCGCGTCC GACACGCTCG GTCTGCTCCG GTCGTTCATC
GCGTAG
|
|---|
| Protein sequence | MPARHAAVPT AGRDDGAAPY AVAHLHALIA TGLSRGFVTH GDIIDGLPDD DANDSGIDAV
AAVLDELGIA VCDSADTASG WTLERYFRPA PPARAWADGA GTLAAADLLA PRTTDPVRLY
LREMGTTPLL TRDEEFAYAR RIERGRAASA AVLCGDPDAL DALVSIRVEI AQCRTAASTY
VIFLDDGPRD DMTVDHAEVR TSATPAGEPA RDDDTEADTQ TEDSAWRGAV VARLARIDEL
AHGMRAALAS GGSACAAYRS HVRDAAALLR TLGLSARALE RMSEPLRARA RRHRALRARL
ERMLADVGVP RSFAHAADDD HAGWLASCIA AHPACAPTLK RRAAEFIDAR DAIVRAAPAS
ELPPGATASL DARLGAIERA MQPARTGLFD ANLRLVVSIA KRYPDRGLPF ADLIQEGNIG
LLKAIERYDY RRGFRFSTYA TWWIRQAITH ALADLGRTIR VPTHTVDALN KLSRLAREHR
QRAGTAATPA ELAVHMGEPV DKVRDLMAIV KEPVSADVPV SPEGDMTFAD VAPDTTTPSP
EDAAGATQLR RTIAAVIDRL PPREAMVLKL RYGLHTDEGC SLRDIGRQLN LSAERVRQIE
ASALARLRAS DTLGLLRSFI A
|
|---|
| |