| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5814 |
|---|
| Symbol | |
|---|
| ID | 6182155 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 349746 |
|---|
| End bp | 350948 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641688949 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_001815808 |
|---|
| Protein GI | 172065096 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGACA TCGTGCTGGC CATGCGCGCG CGTGGCATCA AGTCCTCCGC AGTGCGCGAG
CTGCTGGAAT TCAGCAAGAA CCCCGACGTG ATCTCGCTGG CCGGCGGCAT TCCCGCTTCC
GACCTGTTCG ACATGGACGG CATCGACGAC ACACTCGGCG CCATCCTGCG CGACGAGCAC
CGCGACCTCT TCCAGTATGG CCTCACCGAA GGCGAAACGG GCTTGCGCCA GCAGATCAGC
AACTGGGCCG GCACGCTCGG CATACCGGCT TCGCCGGAAT CGATGCTGAT CACGTCCGGA
TCGCAGCAGG GGCTCGATCT CGTTGCGCGC GTGCTGTTCG ATCAGGGCGA TCGCGTTCTC
GTCGAGCGGC CGACCTATGT CGCCGCGCTG CAGGTATTCC AGTTCATCGG CGCCCGGATC
GACGGCATCA ACGGCGGCCC GGACGGGCTC GATCTCGACC AGGTCGAACG CGAACTGAAG
CGCGGCGGCG TCAAGGCGAT CTACCTGACG CCGAATTTCG CGAATCCGAC CGGCTATACG
ATGCCGCTCG CGCAGCGTAT CCGCCTGGTC GAACTCGCGC AGCGTCACGG CTGCGCGATC
ATCGAGGACG ACCCGTACGG CCAGTTGCGC TTCAGCGGCG CAGCGATTCC GAGCCTGCTG
TCGATCGCTT CGCAGCAGCC GGGCGGCAAC CGCACCGTGT GCTACCTGTC CACCTTGTCG
AAGGTCTTCT CGCCCGGCGT GCGCGTCGGG TGGATCGTGC CGCCCGCGGC GCTGCGGCCG
CCGATGGCCG TCGCGAAGCA GGCATTCGAT CTGCACACGT CGACGCTGAC GCAGGACATC
GTCGCGCGTT ATCTCGCGTC GGGCCGCCTG GCGTCCCGCA TCGACGTGCT GCGCACCGCC
TATCGCAGGC GACGCGATGC GCTGACGAAG GCATTGCGCG ACGCATTCGG CAACGACCTG
TCGTTCAACG AACCCGAAGG CGGGATGTTC CTGTGGTGCC GCTTCGCGCG GCAAGTTCCG
GCGGAAAAGG TGCTCGAAGC GGCCATCCGC GAAAAGGTCG TGTTCGTGCC GGGCAACGCC
TTCTATGCAT CCGATCCGGA ACGCGACACG CTGCGCGTGT CGTATTCGAT GCTCGGAGAA
CAGAGTGCCG AAGAGGCCGC TCGGCGATTG AAGCGTGCGT GGGACACCGT CGTACGCGAT
TGA
|
|---|
| Protein sequence | MNDIVLAMRA RGIKSSAVRE LLEFSKNPDV ISLAGGIPAS DLFDMDGIDD TLGAILRDEH
RDLFQYGLTE GETGLRQQIS NWAGTLGIPA SPESMLITSG SQQGLDLVAR VLFDQGDRVL
VERPTYVAAL QVFQFIGARI DGINGGPDGL DLDQVERELK RGGVKAIYLT PNFANPTGYT
MPLAQRIRLV ELAQRHGCAI IEDDPYGQLR FSGAAIPSLL SIASQQPGGN RTVCYLSTLS
KVFSPGVRVG WIVPPAALRP PMAVAKQAFD LHTSTLTQDI VARYLASGRL ASRIDVLRTA
YRRRRDALTK ALRDAFGNDL SFNEPEGGMF LWCRFARQVP AEKVLEAAIR EKVVFVPGNA
FYASDPERDT LRVSYSMLGE QSAEEAARRL KRAWDTVVRD
|
|---|
| |