| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5803 |
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| Symbol | |
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| ID | 6182053 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | - |
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| Start bp | 335836 |
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| End bp | 336966 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641688938 |
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| Product | putative sigma54 specific transcriptional regulator |
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| Protein accession | YP_001815797 |
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| Protein GI | 172065085 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTCCC TGTTTGCCAC GCCGCGTCCG GTCAATCTTC GTATCGTCAC CGCTCGGCCG
GACGAATCGC GCACGCGCTC GCGCGGCGCG CCCGTTCTCA CCGGCCCGGC ACATCACGCG
GCGGATCGCG CCCGTGCGCA CGTGTTCGTC GATCCGCGTT CGCTCGCGCT GCTCGAACGC
GTGCGGCGCG TCGCGCCGAG CGACGCGAAC GTGCTGATCG CCGGCGAGAC CGGCACCGGC
AAGGAACTGA TCGCACGCCG CGTGCACGAC GTCAGCCCTC GCGGCAACGG GCCGTTCGTC
GCGGTGAACT GCGGCGCGCT ATCCGACACG CTCGTCGACA GCGAACTGTT CGGTCACGAG
AAAGGCGCAT TCACGGGCGC GGTCGGCGCG AAGCCCGGCT GGTTCGAAGC CGCGAACGGC
GGCACGCTGT TTCTCGACGA GATCGGCGAC CTGCCGCTGT CGATGCAGGT CAAGCTGCTG
CGCGTGCTGC AGGAGCGCGA GGTCGTGCGG CTCGGCTCTC GCACGAGCAT ACCGATCGAC
GTGCGCGTGG TGGCCGCGAC CAACGTCGAC CTGGAGCAGG CGGTGGCGGC CGGACGGTTT
CGCGGCGACC TGTTCTACCG GCTCAACGTC GTGCGACTCG ACGTACCGAC GTTGCGCGAA
CGTCCCGGCG ACATCCTGCC GCTTGCGCGC CACTTCCTCG ACACATACCG CGGCCGCCTC
GGCCACGGGC CGCGCAGCAT CGATCCGCGC GCGGCGCGCC GGCTCGAAGC GCATCCGTGG
CCCGGCAACA TCCGCGAACT GGAGAACGTG ATGCATCATG CGGTGCTGGT GAGCCGCCAC
GATGCGTTGC AGGACACCGA CCTGAACCTG TCGTCGGCGT GCGCACCAGC CGCGGGCGCG
CGGGAAGCGG CGAGCCATGC GCCTGCTCAG GAAGCGCTCG AACTGGCGCT GTGCGCGCTG
TTCGACGACG CGCACGAGAA CCTGTTCGAG CGTATCGAGG ACACCGTGAT GCGCGTGGCG
TTCGACTTCA GCCACCGCAA CCAGATCCAG GCCGCGCGAC TGCTCGGCAT CAGCCGCAAT
GTGCTGCGTG CGCGGCTGAT TCGCGCGAAG GTGATCGCGG CGACCAAGTA A
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| Protein sequence | MTSLFATPRP VNLRIVTARP DESRTRSRGA PVLTGPAHHA ADRARAHVFV DPRSLALLER
VRRVAPSDAN VLIAGETGTG KELIARRVHD VSPRGNGPFV AVNCGALSDT LVDSELFGHE
KGAFTGAVGA KPGWFEAANG GTLFLDEIGD LPLSMQVKLL RVLQEREVVR LGSRTSIPID
VRVVAATNVD LEQAVAAGRF RGDLFYRLNV VRLDVPTLRE RPGDILPLAR HFLDTYRGRL
GHGPRSIDPR AARRLEAHPW PGNIRELENV MHHAVLVSRH DALQDTDLNL SSACAPAAGA
REAASHAPAQ EALELALCAL FDDAHENLFE RIEDTVMRVA FDFSHRNQIQ AARLLGISRN
VLRARLIRAK VIAATK
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