| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5769 |
|---|
| Symbol | |
|---|
| ID | 6182514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 295693 |
|---|
| End bp | 296661 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641688905 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001815764 |
|---|
| Protein GI | 172065052 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.322532 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAAAAAA CCTGGCTCTC GGCAGGGCAG ATCCTGCTCA CCCTGATCGT CGTCGTCGTG
GCCGGCCTCG TGCTGTGGCG GATCATCAAC TACTACATGT TCTCGCCGTG GACACGCGAC
GGGCACGTGC GCGCCGACGT AATCCAGGTC GCGCCCGACG TGTCGGGGCT CATCACCACG
GTGCAGGTCG CCGACAACCA GGAGGTCACG CGCGGCCAGG TGCTGTTCGT GATCGACCAG
GCGCGCTACG CGCTCGCGGA ACGGCTGGCC GAAGCGACGC TCGCGCAGCG CCGCGCGACG
CTCGCCCAGG CGAAGCGCGA ATACGCGCGC AACCTGCAGC TCGGCAATCT CGTCGCCAGC
GAACAAGTCG AGGAAAGCCG CACGCGCGTC GAGCAGGGCG AAGCCGCCGT CGCCGATGCG
CAGGTGTCGC TCGATACCGC GAAGCTGAAC CTGCAGCGCA CGACGATCGT GAGCCCCGTC
GACGGCTACC TGAACGACCG TGCGCCGCGC GTCGGCGAAT ACGTGCCGGC CGGCCGCGCG
GTGCTGTCGG TCGTCGACCG CAATTCGTTC CGCGTCGACG GCTACTTCGA GGAAACCAAG
CTGCGCGGCA TCCACATCGG CCAGCCGGTC GACATCGTCG TGATGGGCGA GCCGCATCCG
CTGCGCGGCC ACGTGCAGAG CATCGTCGCC GCGATCGAGG ATCGCGACCG CACGCAGGGC
GCGAACCTGC TGCCGAACGT GAACCCTGCA TTCAGCTGGG TGCGGCTCGC GCAGCGCGTG
CCGGTGCGCG TCGTGCTCGA CGAGGTGCCC GACGACTTCC GGATGATCGC CGGCCGGACC
GCGACCGTCG CGGTGCGCAC CGACACGCGC CGCGACGACA AGGCGAAGCC GGCTGCCGGC
GCTTCCGGGG CAGCCGTGTC GCCCACTTCA TCGCCCGCGG CCGTCAGCGC GACGGGAGCA
TCGCAATGA
|
|---|
| Protein sequence | MKKTWLSAGQ ILLTLIVVVV AGLVLWRIIN YYMFSPWTRD GHVRADVIQV APDVSGLITT
VQVADNQEVT RGQVLFVIDQ ARYALAERLA EATLAQRRAT LAQAKREYAR NLQLGNLVAS
EQVEESRTRV EQGEAAVADA QVSLDTAKLN LQRTTIVSPV DGYLNDRAPR VGEYVPAGRA
VLSVVDRNSF RVDGYFEETK LRGIHIGQPV DIVVMGEPHP LRGHVQSIVA AIEDRDRTQG
ANLLPNVNPA FSWVRLAQRV PVRVVLDEVP DDFRMIAGRT ATVAVRTDTR RDDKAKPAAG
ASGAAVSPTS SPAAVSATGA SQ
|
|---|
| |